Trichothermofontia sichuanensis: OOK60_09435
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Entry
OOK60_09435 CDS
T09010
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
tsz
Trichothermofontia sichuanensis
Brite
KEGG Orthology (KO) [BR:
tsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsz03021
]
OOK60_09435
Transcription machinery [BR:
tsz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OOK60_09435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
HTH_23
HTH_3
HTH_38
Sigma70_r3
Sigma70_ECF
HTH_24
LacI
HTH_AsnC-type
KORA
HTH_Tnp_ISL3
HTH_7
GerE
HTH_Crp_2
HTH_20
HTH_31
HTH_8
HTH_10
CENP-B_N
HTH_30
Fe_dep_repress
HTH_28
Xre-like-HTH
HTH_11
HTH_50
DUF6362
Polyoma_agno
HTH_17
YPEB_N
Motif
Other DBs
NCBI-ProteinID:
UZQ52761
LinkDB
All DBs
Position
2222112..2222888
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AA seq
258 aa
AA seq
DB search
MATQSTLRSRGMELLLAYYQNPSLSLRNQLVSLNAGLVRKVAYRLSYQCTEPYEDLEQIG
YIGLIRAIERFNPNQGCAFSSFAVPYIRGEILHFLRDRGSTVKVPRRWQELHKEGQRLRE
ELLKQLGTVPSDQQIADALQVSLQDWLEAKQVSQNRLPLSLDSICQQTDSCTTLGETLPD
PAYQSLQRLEEERQQIQGALSQLEAKTRAAIEFVFIQGLSRKEVAKRIGVSPMTVSRRIQ
RGLRQLTLALQAKASLSA
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atggcaactcaatcgactctccgttcccgcgggatggaactgctgttagcctactatcag
aatccttccctatccctgcgcaatcaattagttagtttgaatgccggtttagtccgaaag
gtggcttatcgccttagctaccaatgtacagaaccctacgaagatttagaacagataggc
tacatcggtcttatccgggcgatcgaacgcttcaacccgaaccaggggtgtgcctttagc
tcctttgccgtcccctacatccggggcgaaattctccattttttgcgcgatcgcggcagt
actgtcaaagtcccccgtcgctggcaggaacttcacaaggaaggccaacgcttacgggaa
gaactcctgaagcagttgggaaccgttccctcggatcaacagattgcggatgcccttcag
gtttccctgcaagactggctggaagcgaagcaagtgagccaaaaccgtctgcccctgagt
ctggattcgatttgccaacaaactgattcctgtacgaccctgggggagacgctaccagac
cccgcctatcaatcgctacaacgactggaagaagaacgccagcaaatccagggtgccctg
agccagttagaggcaaaaacccgggcagcgattgaatttgtttttattcaagggctatcc
cgtaaggaagtggccaagcggattggcgtgagtccgatgaccgtgagtcggcgcattcag
cgcggtctgcgccaactgaccctcgcactccaggccaaggcgtccctttccgcgtag
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