Trichothermofontia sichuanensis: OOK60_12255
Help
Entry
OOK60_12255 CDS
T09010
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tsz
Trichothermofontia sichuanensis
Pathway
tsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OOK60_12255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsz03019
]
OOK60_12255
Enzymes [BR:
tsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OOK60_12255
Messenger RNA biogenesis [BR:
tsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OOK60_12255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
HEM4
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UZQ53276
LinkDB
All DBs
Position
2882084..2883454
Genome browser
AA seq
456 aa
AA seq
DB search
MTFETLGLSTEILRAVADQGYSEPTPIQQQAIPLILQGRDLLASAQTGTGKTASFTLPLL
HRLGSNRRPQRRSSSPRALILVPTRELAAQVGESVQAYGQYLPMRSAIVYGGVKIGPQIQ
KLRRGVDILIATPGRLLDHLGQGTVTLEQVEMLVLDEGDRMLDMGFLPDIRKILAQLPQT
RQTMLFSATFSPAVKKLAADLLTDPVQVEVAPHNTAAETVEQLIHPVDRHRKRELLSHMI
GYRNWGQVLVFTRTKHGANRLAEQLAKDGLKTEAIHGNKSQAARSRALAKFKQGAVQVLV
ATDIAARGLDIDHLPHVVNFELPMVPEDYVHRIGRTGRAGKAGQAISLVSPEEYTLLKGI
ERLLKRNLPKDVVPGYEPTTPLPAGVEMCSRKRSPHPRYRGNRDQGRGVTRPTRLPEGDL
MRSSRSSVPVKPAKVPTPRFSGTDAARSSDKHMHSA
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgacctttgaaaccctcggcctttcgaccgaaattcttcgtgctgtcgccgatcagggc
tatagcgaaccgacgcctattcagcagcaagcgatccccctaattttgcaaggccgggat
ctgctggccagcgcccaaacaggaaccggtaagacagccagctttacgctacccctgctg
caccgcttgggcagtaaccgtcgtccccaacgccgctcttcctcgccacgggccttgatc
ctggtaccgacccgtgagttggcagcccaggtaggggagagtgtccaagcctatggtcaa
tatctccccatgcgatcggcgatcgtttatgggggggtgaagattggcccccaaattcaa
aagctacggcgcggcgttgacatcctaattgccactcccggtcgtctgctcgatcacctc
ggccagggtaccgttaccctggagcaagtggaaatgctggtgttggatgagggcgatcgg
atgctcgacatgggcttcctgccggatattcgtaagattctggcgcaattgccccaaact
cggcaaacaatgctgttctcagcgaccttctccccagcagtgaagaaactggcagcagat
ctgctgactgatccggtccaagtggaagtggcgccccacaatacagcggcggagacggtg
gagcaactgattcatccggtcgatcgccaccgcaagcgggaactgttgtcccacatgatt
ggctaccgcaactggggccaagttttggtcttcacccggaccaagcacggcgccaaccgg
ctagcggaacagttggcgaaggatggtctgaaaaccgaggcaatccacggcaacaagagc
caagcggcccgatcgcgtgctctggccaagtttaagcagggagcagttcaggtgttggtg
gcgaccgatatcgcggcccggggtctggatattgatcacctgccccacgtggtaaatttt
gaactgccgatggtgccggaggactatgtgcaccgcattggtcgcacgggtcgcgccggt
aaggcagggcaagccatctccctggttagtccggaagagtatacgctgctgaaggggatt
gaacgcctgctcaagcgcaatctccccaaggatgtggtgccgggatatgagccgaccact
cccctccctgcgggggtggaaatgtgcagtcgcaagcgttcaccgcatccccgttatcga
ggtaatcgtgaccaagggcggggagtgactcgtccgacacgactcccggaaggagacctg
atgcgatcgtcgcgatcgtcggtcccagtgaaaccggccaaggtgccaacgccgcgcttc
tcgggcacagatgcggcgcgatcgtcggataagcacatgcattctgcctag
DBGET
integrated database retrieval system
