Trichothermofontia sichuanensis: OOK60_16030
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Entry
OOK60_16030 CDS
T09010
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tsz
Trichothermofontia sichuanensis
Pathway
tsz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OOK60_16030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsz03021
]
OOK60_16030
03400 DNA repair and recombination proteins [BR:
tsz03400
]
OOK60_16030
Enzymes [BR:
tsz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OOK60_16030
Transcription machinery [BR:
tsz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OOK60_16030
DNA repair and recombination proteins [BR:
tsz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OOK60_16030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-ProteinID:
UZQ53981
LinkDB
All DBs
Position
complement(3792697..3794634)
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AA seq
645 aa
AA seq
DB search
MPKLEQRFDYVKIGLASPERIRKWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCER
IFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIQLAAPVAHVWYLKGI
PSYMSILLDMPLREVEQIVYFNAYVVLNPGNAKEVGFDLEEKKLLTEEQWHEIEDEIYRE
DTRLEDEIYREDTRLEGVEVGIGAEALQQLLDRIDLEAEAEQLREEIANSKGQKRAKLIK
RLRVIDNFIATGAKPSWMILQVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRL
ARLQEILAPEIIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFR
QNLLGKRVDYSGRSVIVVGPNLKIHQCGLPREMAIELFQPFVIHRLIRQGLVNNIKAAKK
LIQRGDPSVWEVLEEVIDGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNA
DFDGDQMAVHVPLSLEAQAEARLLMLASNNIMSPATGRPIITPSQDMVLGCYYLTAENPK
AQRDQDYYFASMDDVILAFEQEKIALHQYIWMRFDGEVEDDEPTGEPEVEPMADGGAIKL
YKGQKTGKPLRRVREDADGTVISQYIRTTPGRVIYNKTILEALVG
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaacttgaacagcgatttgattacgtcaaaattggccttgcctcgccggagcgc
attcgtaagtggggggaacggaccctccccaacggtcaggtagtaggcgaggttaccaag
ccagaaaccattaattaccggacgctcaagccggaaatggatggtctgttctgtgagcgc
atttttggcccggctaaggactgggagtgccattgcggtaagtataagcgggtccgccac
cggggtattgtctgcgaacggtgcggtgtagaagtgacggaatcgcgggtccgccgccac
cgaatgggctatatccaattggctgcccctgttgcccatgtctggtacctcaagggcatt
cccagctatatgtcgatcctgctggatatgcccctgcgggaggttgagcaaattgtctat
ttcaatgcctatgtggtccttaacccaggtaatgccaaggaggtgggctttgacctggaa
gagaaaaagctgctgacggaagagcagtggcatgaaattgaggatgagatctatcgcgaa
gacacccgtttagaggatgagatctatcgcgaagatacccgcttagaaggggtggaagtg
ggtattggggctgaggccctgcaacaattgctcgatcgcatcgatttggaagccgaagcg
gaacaactgcgggaggaaattgccaactcgaagggccaaaagcgggccaagttgatcaag
cgcctgcgggtgattgataactttatcgccacgggagcgaaacccagttggatgattttg
caagtgattcccgtgattccgccggacctgcgcccaatggtgcaactggatgggggccgc
tttgccacctcggatttgaatgacctctaccgccgggtgatcaaccgcaataaccgcctc
gctcggctccaggaaattctggctccggaaattattgtccgtaacgaaaagcggatgctc
caggaagctgttgatgccctgatcgataatgggcgacgggggcgtaccgtcgtgggggcc
aataatcgtccgcttaaatccctgtcggacattattgaagggaaacagggtcgcttccgc
caaaacctgctggggaaacgggtggactactccggtcgttccgtgatcgtggtcggtcct
aacctgaaaatccaccagtgtggtctgccccgggaaatggcgatcgaactgttccaaccc
tttgtgatccaccgcctaatccgccaaggtttggttaacaacatcaaagcggctaagaag
ctgatccagcgcggcgatcccagcgtgtgggaagtcctcgaagaagtgattgacggccac
cccgtccttttgaaccgggcaccaaccctacaccgtttagggattcaagcctttgaaccg
attctggtggaagggcgtgcgattcaactccatcccctcgtctgtcctgccttcaacgcc
gactttgacggggaccagatggctgtccacgtgcccctttccctggaagcccaggcagaa
gcccggctcctgatgctggcctccaacaacatcatgtccccggccactggacgaccgatt
attacccctagccaagatatggtgttgggctgctactacctgacagcagaaaatcccaaa
gcccagcgggatcaggactactactttgccagcatggatgacgtgattctggcctttgag
caggaaaaaattgctctgcaccaatacatttggatgcgcttcgatggcgaagtcgaagat
gacgaacccaccggtgaaccagaggttgaaccgatggctgacgggggtgcgatcaagctg
tataaaggccaaaaaacgggcaaacccctgcggcgggtgcgcgaagatgcggacggtacg
gttatttcccaatacattcgcacgacaccgggacgggtgatttacaacaagacgattctg
gaagcgttggttgggtag
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