Pseudothermotoga thermarum: Theth_0188
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Entry
Theth_0188 CDS
T01554
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tta
Pseudothermotoga thermarum
Pathway
tta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Theth_0188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tta03019
]
Theth_0188
Messenger RNA biogenesis [BR:
tta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Theth_0188
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Gene cluster
GFIT
Motif
Pfam:
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AEH50290
UniProt:
F7YV06
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Position
complement(189029..190594)
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AA seq
521 aa
AA seq
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MLIKVLDGHETIGGNKILVADKSNKGFLLDFGLNFTLWSLFFEEFVQPRTGRILADLSKL
ELIPKLDIYREDLNPPCFDDSIDVKFLFISHAHADHCGMIGLIKPDIPLLMTNETLAIMK
ANSDLKQDLIAELYPRKRVKPSDPLIRSDLTEITRSKSEKFQKRKVCIIGSLNTKDQLEE
RFIFTDPSDLWDDRLIVQRAYHSVIGAAGLIVKVDGLWVAYTGDFRLGPRTKEEESFWFE
HFGPTRLELAKRTSLFFDVLRDKKPLLLITEGTRVARKTDSETTEKDVYEKALELVGKTN
KLVIADFPVRHLERLLTFLLIACKTERYLVLMPKDYAYLIMMEQIEPAWKLSEEERKQIK
VYHVAKVQFSSFEEQVLKQAIEEGILIGPDQIESNPSKYIVCAGYWEIPMLLDLDPSALE
GSIYIHSTSEAYTEEQLIDTKRLGNWLKKFFIQPFGIRFEDGEAVFTKEFHASGHISAED
LEEFINSLEPDYILPVHTEEKEWFVERWGKEKIILKNMWYT
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
ttgcttataaaagttctcgacggtcatgaaacgattggtggtaacaaaattcttgttgca
gataaatctaacaaagggtttttactggattttggcttgaattttaccctttggtctttg
ttctttgaagagttcgttcagccaagaaccggcagaattttggctgatcttagcaagctt
gaactgataccaaagctcgatatttacagagaggatctaaacccaccttgttttgatgat
tcaattgacgtgaaatttcttttcatcagccacgcgcatgcggatcactgtggaatgatt
ggattgataaaaccagacattccacttttgatgaccaacgaaactttggctatcatgaag
gcaaattctgatttaaagcaagatttgatcgcagaactttatcccagaaaacgcgttaaa
cccagtgatcctttgattcgatcggatctgaccgaaataacccgcagcaagtcggaaaaa
tttcaaaaaagaaaggtttgcataataggttctttgaacacgaaagatcaacttgaagaa
agatttattttcacagatccatcagacttgtgggacgatcggctgatcgtccaacgtgct
taccattcagtcataggcgctgctggattgatagtcaaagttgacgggctttgggtcgcg
tacacaggagatttcagactaggtccaagaacaaaagaagaggaaagcttttggtttgag
cattttggaccaaccaggttagagcttgccaaaaggaccagcttgttcttcgatgttctt
cgcgataaaaaacctttgctgttgataaccgaaggcacaagggtggctcgaaagacagac
agcgaaaccacggaaaaggatgtttacgaaaaagctttggaacttgttggtaaaacaaat
aaactcgtcatagcagattttcccgtaaggcatctggaaagacttttgacttttcttttg
atcgcttgcaaaacggaaaggtatctggtcttgatgccaaaagattacgcatatttgatc
atgatggagcagatagaaccggcttggaagctttccgaagaagaaaggaagcaaatcaaa
gtttaccacgttgcgaaggttcagttttcaagctttgaggaacaggttttgaagcaagcc
atagaagaaggtattttgattggtcctgatcaaatagaatcaaatccgtcaaaatacatt
gtctgcgcaggttattgggaaatccccatgctgctcgatcttgatccaagcgcccttgaa
ggttcgatctacatacactcaacgagtgaagcttacaccgaagagcaattgatagatacc
aaaaggcttggaaattggttgaagaaatttttcatacaaccgtttgggattagatttgaa
gacggcgaagccgttttcacaaaagaatttcacgcgtcggggcacatatctgccgaagat
cttgaagaattcataaattcccttgaacctgattacatcttgcctgttcatacagaagaa
aaagaatggttcgttgaaagatggggaaaagaaaagatcatattgaaaaacatgtggtat
acttag
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