Pseudothermotoga thermarum: Theth_2002
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Entry
Theth_2002 CDS
T01554
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
tta
Pseudothermotoga thermarum
Pathway
tta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Theth_2002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tta03019
]
Theth_2002
Messenger RNA biogenesis [BR:
tta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Theth_2002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
Motif
Other DBs
NCBI-ProteinID:
AEH52040
UniProt:
F7YWQ0
LinkDB
All DBs
Position
complement(2028224..2029753)
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AA seq
509 aa
AA seq
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MTIVLVAVSALAGIFVGYLVAKSGIEKRIKAAQQDATAILKKAEQEAQEMKKKAIVEARE
EIHRMKEEFEEERRKREAELRALEERLLRREELISKREEVVEKKEAAVELLKNQLESQKK
ILEQKEKEISEKLTQLAGMTVEEAREIVLQQAKERYEHDLAIMFKQIKERYEEEAEKEAK
RIIATAIQRYAPEYVGEITVSTVSLPSDEMKGRIIGREGRNIRTFEKITGVDLIIDDTPE
VVVLSSFNPIRREIARLTLEKLVADGRIHPARIEEMYEKAKQEVEKAIKAAGEEATFATG
VTGLHPELVKLLGKLKYRTSYGQNVLDHSIEVAHLAALMAEELDLDVEKAKRGGLLHDIG
KALDHEVEGSHTEIGAEIARRYGEPDYVINMIMCHHGEEDPASPEAVLVAAADALSAARP
GARRESLENYIRRIVKMEKIAMSFKNVEKAYAIQAGREVRVIVEPEKVDDAEAEKLAYEI
AKKIEEEVEYPGVLKVVVIREKRSVAYAK
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgacgatagttctcgtggcagtgagtgcacttgccggaatttttgttggatatcttgtt
gccaaatcaggaatagaaaaaagaataaaggctgctcaacaggatgcaacggcaatttta
aagaaagcagaacaagaagctcaagaaatgaagaaaaaagcgatcgtcgaagcaagagaa
gaaattcacagaatgaaggaagaatttgaagaagagcgaaggaaaagagaagcagagcta
agagctttagaagaaagacttttgaggcgcgaggaacttatttcaaagcgagaagaagtg
gttgagaaaaaagaagctgccgttgaactcttgaagaaccaacttgaatcgcagaaaaag
attctcgaacaaaaggaaaaggaaatcagcgaaaaactaacccaacttgctggcatgacc
gttgaagaagcaagagaaatagttttacagcaagcaaaagaacgctatgaacacgacctt
gcaattatgttcaaacagatcaaagaaaggtatgaagaagaagccgaaaaagaggcaaaa
aggatcatagcaacggctatacaaagatatgcacctgaatacgttggagaaataaccgtt
tccaccgtaagtctaccttcagacgagatgaagggaaggatcatcggacgtgaaggtaga
aacataaggaccttcgaaaaaataactggagttgacttgataatcgacgacacaccggaa
gtggttgttttgtcaagcttcaacccgataaggagagaaatagcaaggcttactttggaa
aaactcgttgcggatggaagaatacatcctgcaagaattgaagaaatgtacgaaaaagca
aaacaagaggtggaaaaagccatcaaagcggctggtgaagaggcaacctttgcaacgggt
gttacaggattacatccagaacttgttaaactgcttggaaaactcaaatacagaacaagt
tatggtcaaaatgttttggatcattcgatagaagttgcccatcttgcagcgttgatggcc
gaggaactggatttggacgttgaaaaagccaaacgaggaggacttctacacgatattggc
aaagctttggaccacgaggtggaaggctcgcacaccgaaatcggtgcagaaatcgcaaga
cgttatggagaacctgattatgtcatcaatatgataatgtgccatcatggcgaagaagat
ccagcaagtccagaggcagttttggtcgcagcagctgatgctttgtccgcagcaagacct
ggagcaagacgcgagagcttggaaaactacataagaagaatcgtgaagatggaaaagata
gcgatgagcttcaaaaacgtcgaaaaagcttacgcaatccaagctggaagagaagtcagg
gtaatcgttgaacctgaaaaagtcgacgatgccgaagctgaaaaactcgcttacgaaata
gccaagaaaatagaagaagaagttgaatatccaggagttttgaaggttgtggttataaga
gaaaaacgctcagtcgcgtatgcaaagtga
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