Pseudothermotoga thermarum: Theth_2005
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Entry
Theth_2005 CDS
T01554
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
tta
Pseudothermotoga thermarum
Brite
KEGG Orthology (KO) [BR:
tta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tta03016
]
Theth_2005
Enzymes [BR:
tta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Theth_2005
Transfer RNA biogenesis [BR:
tta03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Theth_2005
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Dynein_heavy
DUF7234
Thr_dehydrat_C
Ubiquitin_2
Motif
Other DBs
NCBI-ProteinID:
AEH52043
UniProt:
F7YWQ3
LinkDB
All DBs
Position
complement(2031228..2031794)
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AA seq
188 aa
AA seq
DB search
MRTFIAIDVNEQVRDVAMQIVEKLMRRGFKANWVSRENVHLTLFFLGEVDPKKVDEITRH
LYDRIKGFPSFYYHVEKLGYFVKNNKPAVIWLGVRTNQALQKLYEEMEAELSKHNFSFEK
KFTPHITIGRVKDPLPPAWKALLEDITYEPILVAVDRFAVYSSTLTPSGPIYKKLYECQF
EGGVIKYE
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
gtgagaactttcatagcaattgatgtcaacgaacaggtcagagacgtcgccatgcaaatt
gttgaaaaactgatgcgaagaggctttaaagccaattgggtcagcagggaaaatgtacat
ttaacgctgtttttccttggtgaggttgatccaaaaaaggttgacgagataacgaggcat
ctttacgatcgaataaaaggtttcccatcgttttactaccacgttgaaaaactggggtat
ttcgtcaaaaacaacaaacctgcggtgatatggcttggtgttagaacaaaccaagccctt
caaaaactttacgaagaaatggaggcagagctttcaaagcacaacttttcctttgaaaag
aagttcaccccccacataaccatcggcagggtgaaagatcctcttccgccagcgtggaaa
gcgcttttggaggatataacctacgaaccaatattggttgcagttgacagatttgccgtt
tattcttcaacgctaacgccatcaggtccaatttataaaaagttgtacgaatgccaattc
gaaggaggcgtaatcaagtatgaatga
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