Thalassospira tepidiphila: MACH01_19150
Help
Entry
MACH01_19150 CDS
T09750
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ttb
Thalassospira tepidiphila
Pathway
ttb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MACH01_19150 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttb03019
]
MACH01_19150 (rnr)
03016 Transfer RNA biogenesis [BR:
ttb03016
]
MACH01_19150 (rnr)
Enzymes [BR:
ttb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MACH01_19150 (rnr)
Messenger RNA biogenesis [BR:
ttb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MACH01_19150 (rnr)
Transfer RNA biogenesis [BR:
ttb03016
]
Prokaryotic type
tRNA degradation factors
MACH01_19150 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Casc1_C
Motif
Other DBs
NCBI-ProteinID:
BDW89148
LinkDB
All DBs
Position
2136394..2138826
Genome browser
AA seq
810 aa
AA seq
DB search
MANDTEDKKHFPTKEEIIEFIDMSPTPVGKREIARAFNIKGAAKIELKKILKDLKIGGDV
VKGRRRFDKPDRLPPVEVLEITGVDDDGEVLAKPNVWKHEYEPPLIVVKSIRRGGPSAPG
IGDKILAKLRYTGKHTYEASIMRVLGSGPQRVLGLYRPNEREGRVVPTDRKDSGEIAVPL
DDHPDLESGALVLTEILPGKHFGLRKGRITEVLGNINEPKSISLVSIHARGIPFEFPPEV
ELQARESKATPLGKRTDLRDIPLVTIDGADARDFDDAVWAEADPDPANEGGWHIMVAIAD
VSWYVRPGDALDREAVKRGNSCYFPDRVVPMLPFELSNGWCSLVPHEDRGCMAVEMWLDK
HGHKLRHKFCRGMMKSAARLTYDQVQRAMDGQPDDTTGPLVDTIIKPLYGAFNAFLEARK
KRGVLELDVPERKIELNDSGQIVAIAPRARFDSHKLIEEFMIAANVCAAEELERIKQPCM
YRIHDAPSEEKLEALHEFLEGAGYKLNKASVLKPRDFNRILELAKDTPESELINTVVLRS
QSQAMYSPDNIGHFGLALKRYAHFTSPIRRYADLLVHRALIAGLKLGEGGLTPEEGERFE
QIGEDISGTERRAAMAERDAVDRYVAAYMSDKVGAEFPGKISGVTHFGLFVSLNETGADG
LVPISTLPDDYYVHDAASHALVGQNRGKKFQLGDTVVVRIADADAATGSLALRLAEHADI
TARDLVERPRGRRGAGKRRGSPGDRSHRHGSKPGFRSGPRDANGPAGSSATKSKGKKAAA
KKKTTPKKQRKLVASNRAARNAPKQGPKSD
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
ttggcgaacgatacagaagacaaaaaacacttccccaccaaggaagagattatcgaattc
atcgatatgagcccgacaccggttgggaagcgagaaattgcgcgcgccttcaacattaag
ggcgcagccaagatcgaactcaaaaagatcctgaaagacctgaaaattggcggcgatgtc
gtcaagggccgccggcgttttgacaaacccgaccgcctgcccccggttgaagttctggaa
atcaccggcgttgatgacgacggtgaagttctggccaaaccgaatgtctggaaacacgaa
tacgaaccgccgctgattgttgtgaaatcaattcgtcgcggcggcccaagtgcgccaggc
attggtgacaagattctcgccaagctgcgctataccggcaagcatacctacgaagccagc
atcatgcgggtgcttggaagcgggccacagcgcgttttgggactttatcgccccaatgaa
cgcgaaggccgcgttgtgcccacagatcgcaaggatagcggcgagatcgcggtcccgctt
gacgaccatcccgatcttgaaagcggcgcactggttctgaccgaaattttaccgggcaaa
cactttggtctgcgcaaaggccggattaccgaggttcttggcaatatcaacgaacccaaa
tccatcagccttgtatcgatccatgcgcgcggcattccgtttgaattcccgccggaagtc
gaacttcaggcacgcgagtccaaggccacaccgctgggtaaacgcactgatctgcgcgac
atcccgctggtcaccattgatggcgccgatgcgcgtgactttgacgatgctgtatgggcc
gaagccgaccccgatcccgccaatgaaggcggctggcacatcatggtcgcgattgccgat
gtgtcctggtatgtgcgtccgggcgatgcacttgatcgcgaagcggtcaaacgcggcaat
agctgctatttcccggaccgtgttgtgccgatgttgccgtttgagctttcgaacggctgg
tgttcgcttgtcccgcatgaagatcgcggctgcatggcggttgaaatgtggctggataag
cacggccacaaactgcgtcacaagttctgccgcgggatgatgaagtcggccgcccgtctg
acctatgatcaggttcagcgcgccatggacggccagccagacgacacaaccggtccgttg
gttgataccatcatcaagccgctgtatggcgcgtttaatgcgtttctggaagcgcgcaag
aaacgtggtgttcttgaacttgatgtgcccgaacgcaagatcgaactgaatgacagcgga
cagatcgtcgccattgctccgcgtgcacggtttgacagtcacaagctgatcgaagagttc
atgatcgcagccaatgtctgtgctgccgaagaactggaacgtatcaagcagccctgcatg
tatcgtatccacgatgcaccgagcgaggaaaagcttgaagcgctgcacgaattccttgaa
ggcgctggctataagctgaacaaggcatcggtcctgaaaccgcgtgatttcaaccgcatt
cttgaactggccaaggacacgccagagtctgaactgatcaacacggtcgtgctgcgcagc
cagtcacaggccatgtacagccccgacaatatcgggcacttcggccttgcactgaaacgg
tatgcgcacttcacctccccgatccggcgctatgccgaccttctggtccatcgtgctttg
atcgcgggccttaaactcggtgaaggcggtttgacgcccgaagaaggcgaacggtttgaa
cagattggcgaggacatctcgggcacagaacgacgggcggccatggccgaacgcgatgcg
gttgaccgttatgtcgcagcctatatgtccgacaaggttggggcagagttccccggcaag
atttctggcgtcacccactttggtctgttcgtttcattgaacgaaacaggggcagacggg
ttggttccgatatctaccctgcccgatgactattacgtccatgacgcggcaagccatgcc
ctagtcgggcaaaatcgcggcaagaagttccagctgggcgatacggttgtcgtcaggatc
gccgatgccgatgccgctaccggatcactggcactgcgacttgccgaacacgccgacatt
accgcccgcgaccttgttgaacggccacgtggacgtcgtggtgcaggcaaacgccgtggc
agccccggtgaccgcagccatcgccatggcagcaagcccggttttcgatccggcccgcgg
gacgcaaatggtccggctgggtcgtctgcgacgaagtccaaaggcaagaaagcagcggca
aagaaaaagaccacaccgaaaaagcagcgcaagctggtggcatccaaccgggcggcgcgc
aacgcccccaaacagggcccgaagtcggattaa
DBGET
integrated database retrieval system
