Thalassospira tepidiphila: MACH01_20510
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Entry
MACH01_20510 CDS
T09750
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ttb
Thalassospira tepidiphila
Pathway
ttb03410
Base excision repair
ttb03430
Mismatch repair
ttb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ttb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MACH01_20510
03430 Mismatch repair
MACH01_20510
03440 Homologous recombination
MACH01_20510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ttb03400
]
MACH01_20510
DNA repair and recombination proteins [BR:
ttb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MACH01_20510
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MACH01_20510
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MACH01_20510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
BDW89284
LinkDB
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Position
complement(2286960..2288720)
Genome browser
AA seq
586 aa
AA seq
DB search
MGIERSVTGKWWRERANDERLATTIAQRFGVPEIVGRVMAARGIDLDDAESFLSPTLRDL
MPDPSSLQDMDKAAARIADAIEAGEGIAVFGDYDVDGATSTALLKRFFRAIGVDVPVHIP
DRMKEGYGPNAPALLELQRKGAKLILTVDCGVTAYAPLQEARDAGIEIIVVDHHAAEPEL
PPAVAVVNPNRLDDESGLGHLCAAGVAFLVCVALLRELRNRGWLEKKGVRAPDLRNWLDL
VALGTVCDVVPLRGLNRAFVTQGLKVMKHRSNVGMTSLADIAGVNEVPSAYHLGYVLGPR
VNAGGRVGESFLGTTLLSGENPAEAQDIARRLDEYNRERKAIEDIVLDQAISAVEGKSKV
GSMVLVGGDDWHPGVIGIVASRLKDRYHVPSLVMGKVDGVYKGSARSVRGIDLGDAIIAA
RQAGLLINGGGHHMAAGFTLDPEKLDAFEAFLEERFAKIIAENDIRPTITVDGALHAKGA
TLELIDSLEKLGPFGAGNAEPRFAFVDCRAVKADVVGQDHVRCILTGSNGQGRLKAIAFR
CLDNDMGQTLIKHGGRPLHVLGHLRRDSWQGRDGVQLIIDDVALPV
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgggtatcgagcgatccgtcaccggcaaatggtggcgggaacgcgcaaatgacgagcga
ttggcaaccacgattgcccagcgtttcggcgtgcccgaaattgttggccgggtgatggcc
gcgcgcggcattgaccttgatgacgccgaaagtttcctgtcaccgacactgcgcgatttg
atgcccgatccttccagcttgcaggatatggacaaggcagccgcgcgcattgccgacgcc
atcgaggcgggcgaggggattgcggtatttggcgattatgacgttgatggcgcgaccagt
acggcgttgttgaaacggtttttccgcgccattggtgttgatgtccctgtccatattccc
gatcgcatgaaagagggctatggcccgaatgcgccagcccttctggagctgcagcgcaag
ggcgccaagctgatcctgacggttgattgcggggtaacggcctatgcgccgttgcaagaa
gcccgcgatgccgggatcgagatcattgtcgtcgaccaccatgcagcagagccggaattg
ccgcctgccgtcgcggtcgtgaaccccaaccggcttgatgatgaaagcgggcttgggcat
ctctgcgcggccggtgtggcctttttggtctgtgtggcgttgctgcgcgaattacgcaat
cgcggctggcttgaaaagaagggcgtgcgcgcaccggacttgcgcaactggctggatttg
gtggcccttggcacggtgtgtgatgtggtgccgctgcgcggattgaaccgggcgttcgtc
acccagggccttaaggtgatgaagcaccgatccaatgtcggcatgacgtcgcttgccgat
attgccggcgttaacgaggtgccgagtgcctatcacttgggttatgtccttgggccgcgt
gtgaatgccggtgggcgcgttggagagagttttctgggcaccaccctgctttcgggtgag
aaccccgcggaggcgcaggatatcgcccgcaggcttgatgaatataaccgtgagcgtaag
gcgatcgaggatatcgtccttgatcaggccatcagcgcggttgagggcaaatcaaaggtc
ggctcgatggtgctggtcggcggtgatgactggcatcccggcgtgatcggcattgtcgca
agcagacttaaggatcgctatcacgtgccgtcacttgtgatgggcaaggttgatggagtc
tataagggatctgcgcgatccgtgcggggcattgatctgggtgatgcgatcattgcagcc
cgtcaggccgggcttctgatcaatggtggtgggcaccatatggcggcgggctttaccctt
gaccccgaaaagcttgacgcgttcgaggccttccttgaggaacgctttgccaagatcatt
gccgaaaatgatattcgcccgacgatcacggtcgatggggcgcttcatgccaagggcgcg
acacttgaacttatcgactcacttgaaaagcttggtccgttcggggctggcaatgctgag
cccagatttgcctttgtcgattgccgggcggtcaaggccgacgttgtcgggcaggatcat
gtgcgctgtatcctgaccgggtcaaacgggcaggggcggcttaaggcaattgcgttcaga
tgccttgataatgatatgggtcagaccctgatcaagcatggcgggcgcccgttgcatgtt
ttggggcatttgcgccgcgatagctggcaggggcgtgatggtgtgcagctgatcattgac
gatgtggccttgccggtctag
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