Thalassospira tepidiphila: MACH01_24430
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Entry
MACH01_24430 CDS
T09750
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ttb
Thalassospira tepidiphila
Pathway
ttb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ttb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MACH01_24430 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttb03021
]
MACH01_24430 (rpoC)
03400 DNA repair and recombination proteins [BR:
ttb03400
]
MACH01_24430 (rpoC)
Enzymes [BR:
ttb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MACH01_24430 (rpoC)
Transcription machinery [BR:
ttb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MACH01_24430 (rpoC)
DNA repair and recombination proteins [BR:
ttb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MACH01_24430 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
YnfE
Motif
Other DBs
NCBI-ProteinID:
BDW89676
LinkDB
All DBs
Position
complement(2687022..2691209)
Genome browser
AA seq
1395 aa
AA seq
DB search
MNELMKIFGQPQGTQSFDQIRIQIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYRGIICEKCGVEVTLAKVRRERMGHIELAAPVAHIWFMKSL
PSRLGLLLDMTLKDLERILYFENYVVIEPGLTPLKMGELLSEDQYMTAQEEYGEDSFRAG
IGAEAIRDMLAAIDLDEERETAKIDLKETNSEAKRKKLVKRLKLIEAFQESGARPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QESVDALFDNGRRGRPITGANKRPLKSMSDMLKGKQGRFRQNLLGKRVDYSGRSVITVGP
NLKLHQCGLPKKMALELFKPFVYAKLELYGMATTIKAAKRMVEKERAEVWDILEQVIREH
PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARTLMMSTNNILSPASGKPIIVPSQDIVLGLYYISMERDGQPGEGMSFVNIAEIEQALDE
GVVNLHSKVNARYHTVDENNEPITVRVATTPGRMLLSELLPRHPRIPFSTINKLLTKKDV
SNVIDVVYRHCGQKETVIFADRMMGLGFNWACKAGISFGKDDMIIPDAKEKLVGETHEKV
KEYEQQYQDGLITRGEKYNKVVDAWAQCTDDVSEAMMKVISATAEGDNVNSVYMMAHSGA
RGSAAQMRQLAAMRGLMAKPDGSIIETPIISNFKEGLTVQEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDCIITQHDCGTDRGLDIAAVVDSGEVIETLSDRILGRFTADEIVN
PSTGEIIVPKNEMVEEDHLDLIEKAGVEMARIRSVLTCDAETGVCGHCYGRDLARGTTVN
IGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEVSGVEANFDATVKLKNRAVVENSS
GVNIVMARNLEILLIDKTGRERAKYRVPYGAKLLTDEGAQVTRGQKLAEWDPYTLPIITE
KEGYVNYVDLLENVTIREVYDEATGIASKTVIDWKSMPKASDLKPRVTLRNENGEVINLD
NGLEARYFLSVDAILSVENGQKVAAGDVLARIPREGSKTRDITGGLPRVAELFEARKPKE
HAIISDIPGRVEFGKDYKNKRRVVVHPLEDSGLTEPVEYLIPKGKHLAVQEGDFVEQGDQ
LLDGSPVPHDILRVMGVPALADYLVNEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITKP
GDTTLLVGEIIDRVDFDAENERALKEGGELAEGAPVLQGITKASLQTHSFISAASFQETT
RVLTEAAVSGKTDTLIGLKENVIVGRLIPAGTGAVMNRFRALAAERDKNVQIEAEEEIGD
NFGPQSDTASLPAGE
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagttgatgaagatcttcgggcagccgcagggcacccagagcttcgatcagatc
cggattcagattgccagcccggagcgtatccgctcctggtcgttcggcgagatcaagaaa
ccggaaaccatcaactaccggaccttcaaaccggagcgcgacggcctgttctgtgcgcgc
atttttggtccggtgaaggactacgaatgcttgtgcggcaagtacaagcgtatgaagtat
cgcggcattatctgtgagaaatgcggcgtcgaagtgactctggccaaagtacgtcgtgaa
cgtatgggccatatcgaactggcggcacctgttgcccacatctggttcatgaagtcgctg
ccgagccgtctgggtctgctgctggacatgacgctcaaggatcttgagcgcattctgtac
ttcgaaaactatgtggttatcgaaccgggccttaccccgcttaaaatgggtgagctcctg
tccgaagaccagtatatgaccgcccaggaagaatatggcgaagacagcttccgcgccggt
atcggtgccgaggccatccgcgatatgcttgcggcgatcgaccttgatgaagaacgcgaa
accgcgaaaatcgacctcaaggaaaccaattccgaagccaagcgcaagaagctggtcaag
cgtctcaagctgattgaggccttccaggaatctggcgcacgcccggaatggatgatcctt
gaagtgatcccggttatcccgccggaactgcgcccgctggttccgctggatggcggccgt
ttcgcgacctctgatctgaacgatctttatcgtcgtgtgatcaaccgtaacaaccgtctg
aagcgcctgatcgagcttcgtgcgcctgatattatcgtgcgtaacgaaaaacgtatgctt
caggaatcggttgacgcgctgtttgataacggccgtcgcggtcgtccgatcaccggtgcc
aacaagcgtccgctcaaatcgatgtcggacatgcttaaaggtaagcagggtcgtttccgt
cagaaccttctgggtaaacgcgtcgactattccggtcgttcggttattaccgtgggtccg
aacctgaaactgcaccagtgcggtctgccgaagaaaatggcgctcgaactgttcaagccg
ttcgtttacgcgaagctggaactgtacgggatggcgaccaccatcaaggctgcaaagcgc
atggtggaaaaagagcgtgccgaagtttgggatatccttgaacaggttatccgtgaacac
ccggtcatgcttaaccgcgcaccgacgctgcaccgtcttggtattcaggcgttcgagcct
accctgatcgaaggtaaggccatccagctgcacccgctcgtttgtactgcgtttaacgcg
gacttcgacggtgaccagatggctgttcacgtaccgctgtcgcttgaagcccagcttgaa
gcacgtaccctgatgatgtcgaccaacaacatcctgtcgccggcgtcgggtaaaccgatc
atcgtgccgtcgcaggacatcgtccttggtctgtactacatctccatggagcgtgatggt
cagccgggcgagggcatgtcgtttgttaacatcgccgagatcgagcaggcactggatgaa
ggtgttgtaaacctgcattccaaggtcaatgcccgttaccacacggttgatgaaaacaac
gaaccgatcaccgttcgtgttgccaccaccccgggccgcatgttgctgtcggaacttctg
ccgcgtcatccgcgcattccgttctcgaccatcaacaagctgctgaccaagaaagatgtc
tcgaacgttatcgacgtcgtctatcgtcactgtggccagaaagagaccgttatctttgct
gaccgcatgatgggccttggtttcaactgggcatgtaaagccggtatttcgtttggtaag
gatgacatgatcattccggacgccaaagaaaagctggttggcgagacccatgaaaaggtc
aaggaatacgagcagcagtaccaggatggtctcatcacccgtggtgagaaatacaacaag
gttgttgacgcctgggcacagtgcaccgacgacgtttccgaagcgatgatgaaagtcatc
tcggcaacggccgaaggtgacaatgtgaactcggtttacatgatggcgcactccggtgcc
cgtggttctgccgcccagatgcgtcagctggctgctatgcgtggcctgatggcgaaaccg
gatggctcgatcatcgagacgccgattatttcgaactttaaagaaggcctgaccgtgcag
gagtacttcaactccactcacggtgctcgtaaaggtctggctgataccgcactgaaaacg
gcgaactcgggttacctgacccgtcgtctcgttgacgtggcccaggactgcatcatcact
cagcatgattgcggtaccgatcgtggtctcgacatcgcagccgtcgtcgactccggtgag
gttatcgaaaccctttccgatcgtatcctcggtcgtttcaccgctgacgagattgtcaat
ccgtcgaccggtgaaatcatcgtaccgaagaacgaaatggtcgaagaagatcaccttgat
ctgatcgaaaaggctggcgtcgaaatggcgcgtatccgttcggttctgacctgtgacgcc
gaaaccggtgtttgcggccattgctatggtcgtgacctggcccgcggtaccacggtcaac
atcggtgaagctgtcggtgttatcgccgcgcagtcgatcggtgaaccgggtacccagctg
accatgcgtacgttccacattggtggtgccgcgcagcgtggtgcagaagtttccggtgtc
gaagcaaacttcgatgccaccgtgaaactgaaaaaccgcgcggttgttgagaactcgtcg
ggcgtgaacatcgtcatggcgcgtaacctcgagatcctgttgatcgacaagaccggtcgt
gaacgtgcgaaatatcgtgttccgtatggtgcgaaacttctgaccgatgaaggcgcgcag
gttacccgtggccagaaactggctgaatgggatccgtacaccctgccgatcatcaccgag
aaagaaggttacgtgaactatgtcgaccttctcgagaacgtaaccattcgcgaagtctat
gacgaagcgaccggtatcgcctcgaagacggttatcgactggaagagcatgccgaaggca
tccgaccttaagccgcgcgttaccctgcgtaacgaaaacggcgaggtcatcaacctggat
aacggccttgaagcccgttacttcctctcggttgatgctattctctcggtcgagaacggt
cagaaggtcgcagctggtgacgtgcttgcacgtatcccgcgtgaaggttcgaaaacccgt
gacattaccggtggtctgccgcgcgttgccgagctgttcgaagcccgtaaaccgaaagaa
cacgcgattatctcggatatcccgggtcgcgtcgaattcggcaaggactacaagaacaag
cgtcgcgtcgtggttcatccgctcgaagactcgggtttgaccgaaccggtcgaatacctg
atcccgaaaggcaagcaccttgccgttcaggaaggcgacttcgtcgagcagggcgatcag
cttctcgatggttcaccggttccgcacgacattctgcgtgttatgggcgtcccggcactg
gcagactacctggtcaacgagatccaggaagtctaccgtctgcagggcgtgaagattaac
gacaagcacatcgaagtcatcgtacgtcagatgctgcagaaagtggaaatcaccaaaccg
ggtgacaccacgcttctggttggcgaaatcattgaccgcgttgattttgatgccgaaaac
gaacgtgctcttaaagaaggcggcgaactggccgaaggcgcaccggtcctccaggggatc
accaaagcctcgctccagacgcactccttcatttcggccgcgtcgttccaggaaaccacg
cgcgttcttaccgaggcagctgtctcgggcaaaaccgatacgcttatcggtctgaaagag
aacgtcatcgtgggtcgtctgatcccggctggtaccggtgcggtgatgaaccgcttccgt
gcactggctgccgaacgcgacaaaaatgtacagatcgaagcagaagaggaaatcggcgac
aactttggtccgcaatccgatactgcttcactgccggcaggcgaataa
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