Thalassospira tepidiphila: MACH01_25970
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Entry
MACH01_25970 CDS
T09750
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ttb
Thalassospira tepidiphila
Pathway
ttb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MACH01_25970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttb03019
]
MACH01_25970
Enzymes [BR:
ttb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MACH01_25970
Messenger RNA biogenesis [BR:
ttb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MACH01_25970
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
DUF1408
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BDW89830
LinkDB
All DBs
Position
complement(2847173..2848990)
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AA seq
605 aa
AA seq
DB search
MTQFSELGLAEPVLRALAQEGYDAPTPIQAQSIPSLLDGKDLLGIAQTGTGKTAAFALPI
LDRLSKSQTRTPKGACRVLVLAPTRELAAQIGESFRAYGRFLDVRTAVVVGGVAPGPQIK
AITPGVEVLVATPGRLLDHVDSGKLSLKHVEVVVLDEADHMLDLGFLPPIKRIIKMLPRD
RQNLFFSATMPTQIGQLAGDMLSDPVKVSVTPVATTQERVEQSVYLIERTRKRQLLAELL
DNPAFKRTLVFTRTKRGADRVARHLEANKISAAAIHGNKSQNQRERALNAFKDGQINVLV
ATDIAARGIDVDSVTHVVNFELPNVPESYVHRIGRTARGGASGSAIAFCDEEERGLLRDI
EKTTRQSIPVIDRRDAKAAAEQEALSDEARESNRGRRTSGGNGGGQSRGNGGRGASGGNG
RGGRPANGRNARNDRSDRSDARTSAPRRDRDDARKQTTQSRDGADNASRATADKAPSNPA
LEKSKSRYKGGLKSKPANGRGGNPENGPRQNDGGKRPTKRVDSNGNRRDGAKADNSISSG
LSFMGSAEERRATGNGSNSARNTGPQGKRGGVNRNRNHRGAQSGGQPGGAGRENTSGKQP
RRERA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
ttgacccagttttccgaactcggcctcgccgagccggtccttcgcgcgcttgcccaagaa
ggctacgacgcgccgaccccgatccaggcacaatccattccctctcttctagacggtaag
gacctacttggtatcgcacagaccggtaccggcaagacggcagcgttcgcattgccgatc
cttgaccgcctttccaaatcccaaacccgcacgcccaaaggggcatgccgtgtacttgtt
cttgcgccgacgcgtgaacttgccgcccagattggcgaaagtttccgtgcctatggccgc
tttctcgatgttcgcacggctgtcgttgttggtggtgttgcccctggtccgcagatcaag
gcaataacccccggcgtcgaggttcttgtcgcaacacctggtcgtttgcttgaccatgtt
gatagcggcaagctcagccttaaacatgttgaagtggtggtgcttgatgaagccgaccac
atgcttgatctcggcttcttgccgccgatcaagcgcatcatcaagatgttgccgcgtgat
cgccagaacctgtttttctctgccaccatgccgacccagattggtcagctggcaggggac
atgctgtctgatcctgtcaaggtgtcggtaaccccggttgctaccacccaggaacgcgtc
gagcagtcggtctacttgatcgaacgcacgcgcaagcgtcagctgctggcagagcttctt
gataatccggctttcaagcgcacgctggtctttacccggaccaagcgcggtgccgaccgt
gtcgcgcgccatcttgaagccaataaaatcagtgcggctgccattcatggcaacaaaagc
cagaaccagcgtgaacgtgctctgaacgcctttaaggatggtcagatcaacgtgcttgtc
gccaccgatatcgccgcgcgcggtatcgatgtcgatagcgtgacccacgttgtgaacttc
gaactcccgaacgtgcccgaaagctatgttcaccgtatcggccgtacggcccgcggtggt
gccagcggatcggcaattgcgttttgtgatgaagaagaacgtggtctgctgcgcgatatc
gaaaaaaccacccgccagagcattccggtgattgatcgccgtgatgcaaaggccgcagcc
gagcaggaagcactttccgacgaagcgcgtgaaagcaaccgtggccgccgcactagtggt
ggcaatggtggcggtcagtcgcgtggaaatggcggacgtggtgcatcaggcggcaatggt
cgcggtggtcgcccggccaatggccggaatgcccgcaatgatcgttcagatcgcagtgat
gcgcgcacttctgcgccgcgtcgtgatcgtgacgatgcccgcaaacaaacgacccaaagc
cgcgatggcgcagacaatgcttcaagagcaacggctgacaaggccccttcgaacccggca
ctggaaaaatccaaaagccgttacaagggtggtctgaagtcaaaacctgccaatggtcgt
ggcggaaaccctgaaaatggcccccgtcagaatgatggtggcaagcgcccgacgaaacgc
gttgattccaatggaaatcgtcgcgacggggcgaaagctgacaattcaatttcttccggt
ttgtcctttatgggcagtgccgaggaacgccgcgcgactggtaacgggagcaatagtgcc
cgaaataccggaccgcaaggcaagcgcggcggtgtaaaccgcaatcgcaatcatcgtggc
gcacagtccggcgggcagccgggtggtgcgggccgcgaaaacacttctggaaaacagccg
aggcgtgaacgcgcctga
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