Thalassospira tepidiphila: MACH01_34530
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Entry
MACH01_34530 CDS
T09750
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ttb
Thalassospira tepidiphila
Pathway
ttb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MACH01_34530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttb03019
]
MACH01_34530
Enzymes [BR:
ttb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MACH01_34530
Messenger RNA biogenesis [BR:
ttb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MACH01_34530
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Flavi_DEAD
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BDW90686
LinkDB
All DBs
Position
complement(3833018..3834841)
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AA seq
607 aa
AA seq
DB search
MTNFNGLNLIEPLLRNVEAAGFSAPTEIQAATIPALLEGKDLMGISHTGGGKTAAFCLPL
LQRLAENPQRPKPGQPRAVILAPTRELATQIGQCLRDFKKGIRLFSSVVFGGSPMGPQIQ
ELRRGVDILVATPGRLLDHMSRNTVRFDDVEVFILDEADRMLDMGFSEDVLTVAELLPNA
HQTVMFSATMPPEVKHLTDRLLKDPVKVETAPQSSVTERVTQVGMFVKRHDKTKLLVQLL
KRDESERVLVFTKTKADADELSFQLRDEGIDSDAIHGDKQQRIRQKILRNFRNGSFPVLI
ATDVAARGIDVPGITHVVNYDLPQDAESYVHRIGRTGRGSAEGIAISFCEPRDIRLLRNI
ERLIKQDVNIDEDHEFHAAPPPRSFGAGAGAGGRGGRGGRDGGRGFGGGGRGGFGGRDGG
RDGGRGRGGFGGGRDGGRDGARGDNRDGGRGRGFGGPRDGARDGARAEGDRAARGFGGRD
EARDGGRDGARRDFNDRPRRDGGDFRNDRKPRFDNDDRAPRGDREERSGGRGGNFRPRGE
GGNRDERRFADKPRGDRGGNFRGRDGGRDGAGARDGARRDFNDRPRRAEGGRSEGRGGNQ
GMKRRSA
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgacgaattttaatgggctcaacctgatcgagcccctgctgcgcaatgttgaagctgcc
ggtttctccgcgccgaccgaaattcaggccgcgacgattcctgcacttctcgaaggcaag
gacctgatgggtatttcccatacgggtggcggtaaaaccgctgcattctgcctgccgttg
ctgcagcgtcttgccgaaaacccgcagcgcccgaaaccgggtcagccgcgtgcggttatt
ctggcaccgacccgcgaactggcgacccagatcggccagtgcctgcgtgatttcaaaaaa
ggcatccgcctgttttcctctgttgtctttggtggctctccgatgggcccgcagattcag
gaactgcgccgtggcgttgatatcctggttgcgaccccgggtcgtctgctggatcatatg
tcgcgcaacacggttcgtttcgacgatgtcgaagtcttcatccttgatgaagctgaccgt
atgcttgacatgggcttctccgaagacgttctgactgttgctgaactgcttccgaatgcg
catcagaccgtgatgttctcggcaaccatgccgccggaagtcaaacacctgaccgaccgt
cttcttaaagacccggtcaaggttgaaaccgcaccgcagtccagcgtgaccgagcgcgtg
acccaggttggcatgttcgtgaaacgtcacgacaagaccaagcttctggttcagctgctt
aaacgtgacgaatccgaacgcgttctggtgtttaccaaaaccaaggcagatgccgacgaa
ctgtcgttccagctgcgcgatgaaggcatcgacagcgatgccatccatggcgacaaacag
cagcgcatccgtcagaaaatcctgcgtaacttccgcaatggcagtttcccggttctgatt
gcgaccgatgttgcggcacgtggtatcgacgttccgggtattacccatgttgtgaactat
gatctgccgcaagatgccgaaagctatgtccaccgtatcggtcgtaccggtcgtggcagt
gccgaaggtattgcgatttcattctgtgagccgcgcgacattcgcctgcttcgcaacatc
gaacgcctgatcaaacaggacgttaatatcgacgaagatcacgaattccatgctgctccg
ccgccccgttcgttcggtgccggtgcgggtgctggcggtcgtggtggtcgcggtggccgt
gacggtggtcgtggctttggcggcggcggtcgtggtggtttcggcggccgtgatggcggt
cgcgatggtggccggggccgtggtggtttcggcggtggtcgtgatggcggccgcgatggt
gcccgtggtgacaatcgtgacggtggtcgcggtcgtggtttcggcggcccgcgtgatggc
gcccgtgatggtgcccgcgccgaaggtgatcgcgcagcccgcggtttcggtggtcgtgat
gaggcacgcgatggtggccgtgatggcgcacgtcgtgacttcaatgatcgtccgcgtcgt
gatggcggtgatttccgcaatgaccgcaagccgcgctttgacaacgatgaccgtgcaccg
cgcggcgatcgtgaagaacgcagtggcggccgcggtggcaacttccgccctcgtggcgaa
ggtggcaaccgtgacgaacgtcgctttgccgacaagccgcgtggtgatcgtggtggtaac
ttccgcggtcgcgatggtggccgtgatggtgccggtgcgcgcgacggtgcacgtcgtgac
ttcaacgaccgtccgcgtcgtgccgaaggtggtcgcagcgaaggtcgcggtggcaaccag
ggtatgaaacgccgttcggcataa
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