KEGG   Thalassospira tepidiphila: MACH01_36390
Entry
MACH01_36390      CDS       T09750                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
ttb  Thalassospira tepidiphila
Pathway
ttb03030  DNA replication
ttb03410  Base excision repair
ttb03420  Nucleotide excision repair
ttb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ttb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MACH01_36390
   03410 Base excision repair
    MACH01_36390
   03420 Nucleotide excision repair
    MACH01_36390
   03440 Homologous recombination
    MACH01_36390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ttb03032]
    MACH01_36390
   03400 DNA repair and recombination proteins [BR:ttb03400]
    MACH01_36390
Enzymes [BR:ttb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     MACH01_36390
DNA replication proteins [BR:ttb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     MACH01_36390
DNA repair and recombination proteins [BR:ttb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     MACH01_36390
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MACH01_36390
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 HHH_5 Taq-exonuc NYN_YacP WHD_BrxR
Other DBs
NCBI-ProteinID: BDW90872
LinkDB
Position
4038882..4041713
AA seq 943 aa
MTDSAPSSTGSSADKSPRRVVLVDGSGFIFRAFHALPPMTSPDGTPVNAVYGFCTMLMKL
REDTKPDHMAVIFDTKGKSFRNDFYPDYKAHRPPPPEELVPQFGLIRDATRAFNLPSIEL
EGFEADDLIATYARQAEAEGSDVIIVSSDKDLMQLVTDRVQMFDAMKNRTIGAAEVLEKF
GVSPDKVIDIQALAGDSVDNVPGVPGIGIKTAAQLIDEYGDLDSLLERAGEIKQPKRREK
LIENAELARISRDLVTLKTDVPVVEPLGDFELREPDPEVLLSFIASHGFKSLLSKVKSKF
GGDVEFESPTAAGVGVNDIKVEKAEYELVQDEDRLRHWISEAEYLGTVAVDTETTSLDAH
TAKLVGVSLSTEPGNGCYIPLGHVSGEAQGGFDFGDNPADSPSNSKDAPKQIKLERAIEL
LKPLLEDPGVLKVGQNLKYDMIVLARHGIKVAPMDDTMVLSYVLDGTSHGHGMDELAELH
LDYKPISFKDVCGSGKTQITFDQVPLDKALDYAAEDADITLRLHRLLKPRIAQEHMASVY
ETLDRPLVPVLAEMEGLGVKVDAEILKNLSEDFAKRMAALEETIHEMAGEPFNLGSPKQL
GEILFDKMSLPGGKKTKTGAWQTGADVLEALAAQGHDLPAKLLEWRQLSKLKSTYTDALA
HHINPNTGRVHTSYGQTNVNTGRLSSNDPNLQNIPIRSEEGRKIRTAFIAEPGHKLISAD
YSQIELRLLAHVAEIDALREAFKNGEDIHAATASKVFGVPIEGMDPMVRRKAKAINFGII
YGISAFGLANQLGIAQKEAKEFIEAYFEIYPGIRDYMDEAKEFAKRHGFVRTLFGRHIHI
NGINDKNGMRRSFGERAAINAPIQGGAADIIKRAMIAVPNALLDAGLKTRMLLQVHDELI
FEAPEDEAEKAIKTIREVMENAAHLSVPLIADAGIGDSWADAH
NT seq 2832 nt   +upstreamnt  +downstreamnt
atgacagattccgccccgtccagcaccggttcgtccgccgacaaatccccgcgtcgcgtc
gttctggttgacggttccggctttattttccgcgcctttcacgccctgccaccgatgacg
agccccgatggcacgccggtgaatgcggtctatggcttctgcaccatgttgatgaagctg
cgcgaagataccaaaccagaccatatggcggtgatctttgacaccaagggcaagtcgttc
cgcaacgacttctatcccgactacaaggcccatcgtccgccgccccccgaagaactggtg
ccgcagtttggcctgatccgtgatgcgacccgtgcatttaacctgccatcgatcgagctt
gaaggttttgaggccgacgatctgatcgcgacctatgcccgccaggccgaggcagagggt
tctgacgtgattatcgtgtcttcggacaaggacctcatgcagttggtcaccgatcgggtg
caaatgtttgatgcgatgaagaatcgcaccatcggtgctgccgaagttctggaaaaattc
ggcgtttccccggacaaggtcattgatattcaggcgcttgcaggcgattccgtcgataac
gtgccgggtgtacccggcatcggcattaaaaccgccgcccaacttattgatgaatatggc
gatcttgattctctactggaacgcgcaggcgaaatcaaacagcccaaacgccgcgagaaa
ctcatcgaaaatgccgagcttgcccgtatttcgcgtgatctggtgacgctgaaaaccgat
gtcccggtggtcgaaccactcggtgacttcgaattgcgtgaacccgatccagaagttctt
ttaagcttcatcgcaagtcacggctttaaatcattactttctaaagtaaaatcgaaattc
ggcggcgatgttgagtttgaaagcccgacggcggccggtgttggcgtcaatgatatcaaa
gtcgaaaaggcagaatatgaactggtgcaggatgaagaccgcctaaggcactggatttcc
gaggccgaatatcttggcaccgtcgcggtcgataccgaaaccacatcacttgatgcccat
acggccaagctggtcggcgtttcgctttcgaccgagccgggcaatggctgctacatcccg
cttggtcatgtcagtggcgaagcacaaggcggctttgattttggcgacaatcccgccgac
agcccaagcaacagcaaggacgcgccgaagcaaatcaagcttgagcgcgcgattgagctg
ctcaaaccgctgttggaagacccgggtgtgctgaaggtcggtcagaacctgaaatacgat
atgatcgttctggcccgccatggcatcaaggttgccccgatggatgacaccatggtgctg
tcctatgtgcttgatggcaccagccacgggcatggcatggatgaactggccgagttgcat
ctggactacaaaccgatttccttcaaagatgtctgtggcagtggcaagacccagatcacc
ttcgatcaggtcccgctcgacaaggcgcttgattacgcggccgaggatgccgatatcacg
ctgcgcttgcatcggttgctcaaaccccgcatcgcgcaggaacatatggccagcgtctat
gagacgcttgatcgtccgctggtgccggttctggccgaaatggaaggccttggggtcaag
gtcgatgccgagatcctcaaaaacctgtccgaagacttcgccaaacgcatggccgccctt
gaagaaaccattcacgaaatggcgggcgagccgtttaaccttggcagccccaagcagctt
ggcgaaatcctttttgataaaatgagcctgcccggcggcaaaaagaccaaaaccggcgcc
tggcagaccggagccgatgtgcttgaggcgttggctgcccaaggccatgaccttccggcc
aagcttctggaatggcgtcagctttccaagcttaaaagcacctataccgacgcgctggcc
caccatatcaaccccaatacgggccgcgtgcacaccagttacgggcaaaccaacgtcaat
accgggcgtttgtcatcaaacgacccgaacctgcaaaacatcccgatccgaagcgaggaa
ggccggaaaatccgtacagcctttatcgccgagcccggtcacaaactgatttctgccgac
tactcgcagattgaattgcgccttctggcccacgtggccgagatcgacgccctgcgcgag
gcgtttaaaaatggcgaggacatccacgccgcaaccgcatcgaaggtgtttggcgtcccg
atcgagggcatggacccgatggtccgtcgcaaggccaaggcgatcaacttcggcatcatt
tatggcatctcggcctttggcctcgccaaccagcttggcattgcccagaaggaagccaag
gaattcatcgaagcctatttcgagatttatccaggcatccgcgattacatggacgaggcc
aaggaattcgccaaaaggcacggctttgtccgcaccctgtttggccgccacatccatatc
aacggcatcaacgacaaaaacggcatgcgccgaagctttggcgaacgtgccgcgatcaac
gcgcccatccagggcggtgcggccgacatcatcaaacgcgcgatgattgcggtcccgaac
gcgttgctggatgctgggcttaagacccgcatgctgcttcaggtccacgatgaattgatc
tttgaggccccggaagacgaagccgaaaaggcgatcaagaccatccgcgaagtcatggaa
aacgccgcccacctgtcggtgccgctgattgccgacgccggcattggcgatagctgggcc
gacgcgcactag

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