Thalassospira tepidiphila: MACH01_38460
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Entry
MACH01_38460 CDS
T09750
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ttb
Thalassospira tepidiphila
Pathway
ttb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MACH01_38460 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttb03019
]
MACH01_38460 (pnp)
03016 Transfer RNA biogenesis [BR:
ttb03016
]
MACH01_38460 (pnp)
Enzymes [BR:
ttb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
MACH01_38460 (pnp)
Messenger RNA biogenesis [BR:
ttb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MACH01_38460 (pnp)
Transfer RNA biogenesis [BR:
ttb03016
]
Prokaryotic type
tRNA degradation factors
MACH01_38460 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
aRib
SPATA25
Motif
Other DBs
NCBI-ProteinID:
BDW91079
LinkDB
All DBs
Position
4245357..4247480
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AA seq
707 aa
AA seq
DB search
MFNVVRKEMQWGNAKLVLETGKIARQADGAVKVTYGETVVLCTAVGAKQPRPDVDFFPLT
VNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFHPQYRNDTQIVCTVLSH
DMENDPDVVAMIGTSAALTISGLPFLGPIGAARVGYKDGEYLLNPSTEAVKESDLDLVVA
GTRDGVMMVESEASELSEEIMLGAVKFGHEQFQGVLDLIIDLAEEAAKEPRDVAELPEGY
DALVEKIAALGTESLTAAYAHVVKQERSAAVSAAKADIVEKLGDEVPDALKGKVSSIIKD
LEKDIVRGAILKTGKRIDGRTGADVRPIMGEVSVLPRSHGSSIFTRGETQALAVVTLGTG
QDEQIVDALDGEYRESFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRALHPLMPGKD
AFPYTTRIVSEVTESNGSSSMATVCASSLAMMDAGVPLARPVAGIAMGLIKEAEDFAVLS
DIMGDEDHLGDMDFKVAGTENGITSLQMDIKITSVTPDIMQIALKQARDGRLHILGEMAK
ALPEARGEVSGNAPTITQFSIPKDKIRDVIGSGGKVIREICEETGAKVDIEDDGSITVAH
TDGAKGKQAVDWIKSIVAEPELNHIYDGKVVKAVDFGAFVNFFGARDGLVHISELAPERV
KQVSDIVKEGDQVKVKVIGFDDRGKIKLSMKRVDQETGADLDAGDAE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatgtcgtccgtaaggaaatgcagtggggcaatgccaaactggttctcgaaacc
ggtaaaatcgcccgtcaggcagatggtgccgtcaaggttacctacggtgaaaccgttgtc
ctgtgtactgctgttggcgccaaacagccgcgcccggatgtcgactttttcccgctgacg
gttaactaccaggaaaaagcatttgccgctggcaaaatcccgggtggcttcttcaaacgt
gaaggccgtccgtctgaaaaagaaacccttgtttcgcgtctgatcgaccgtccgatccgt
ccgttgttccacccgcagtaccgcaacgacacccagatcgtttgtaccgttctgtcgcac
gacatggaaaacgatccggacgtggttgccatgatcggtacctcggcggccctgaccatt
tccggtctgccgttccttggcccgattggtgctgcccgcgttgggtacaaggatggtgaa
taccttctcaacccgtcgaccgaagcggtcaaggaaagcgatctggatctggttgttgcc
ggtacccgcgatggcgtgatgatggttgagtccgaagcatccgagctgtccgaagaaatc
atgcttggcgctgtgaagttcggtcacgaacagttccagggcgttctcgacctgatcatt
gatctggccgaagaagcagccaaagagccgcgtgacgttgcagaacttccggaaggttac
gacgcactggtcgaaaagatcgctgcgctgggcaccgaaagcctgaccgctgcttatgca
catgttgtcaaacaggagcgttcggctgctgtttctgctgccaaggcagacatcgtcgag
aaacttggtgatgaagttcccgatgcgctgaaaggcaaagtttcctcgatcatcaaggat
ctggaaaaagacatcgttcgcggtgcgatcctgaaaaccggcaagcgtatcgatggtcgt
accggtgctgacgttcgtccgatcatgggcgaagtttcggttctgccgcgttcgcacggt
tcctcgatcttcacccgtggtgaaacccaggcactggctgttgttacccttggtaccggt
caggacgagcagatcgttgacgcgctggacggtgaataccgtgaaagcttcatgctgcat
tacaacttcccgccctactcggttggtgaagctgggcgcatggggtcgccgggccgtcgt
gaaatcggtcacggtaaactggcatggcgtgccctgcacccgctgatgccgggcaaggat
gccttcccgtacaccacccgtatcgtttccgaagtcaccgaatcgaacggttcttcttcg
atggcaaccgtttgcgcaagctcgcttgcgatgatggatgccggtgttccgctggcacgc
ccggttgcgggtatcgccatgggcctgatcaaggaagccgaagatttcgcagttctgtcc
gacatcatgggtgacgaagatcaccttggtgacatggacttcaaggttgctggtaccgaa
aacggtattacctccctgcagatggacatcaagatcacttcggtaaccccggacatcatg
cagatcgccctgaagcaggcccgcgatggtcgtctgcacattcttggtgaaatggccaaa
gcccttccggaagcacgcggtgaagtttcgggcaacgccccgaccatcacccagttctcg
atcccgaaagacaaaattcgtgatgtcatcggttcgggcggtaaggtcattcgcgaaatc
tgcgaagagaccggtgcaaaggttgatattgaagatgatggttcgatcactgtcgcacat
accgacggtgcaaaaggcaagcaggccgtggattggatcaaatccatcgttgcggaacct
gaattgaatcatatctatgatggtaaggtcgttaaggctgtcgatttcggcgcattcgtg
aacttctttggtgcgcgtgacggtctggttcacatttccgaactggcacctgagcgtgtc
aaacaggtttcggacatcgtgaaagaaggcgaccaggttaaggtcaaagtcatcggtttc
gatgatcgcggcaaaatcaaactgtcgatgaaacgtgttgaccaggaaaccggtgccgac
ctcgacgcaggcgacgccgaataa
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