Thiohalobacter thiocyanaticus: FOKN1_1482
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Entry
FOKN1_1482 CDS
T05229
Name
(GenBank) DNA/RNA helicases
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ttc
Thiohalobacter thiocyanaticus
Pathway
ttc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOKN1_1482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttc03019
]
FOKN1_1482
Enzymes [BR:
ttc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOKN1_1482
Messenger RNA biogenesis [BR:
ttc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOKN1_1482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
AAA_22
YwhD
UTP25_NTPase-like
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
BAZ93878
UniProt:
A0A1Z4VRB1
LinkDB
All DBs
Position
1562316..1563629
Genome browser
AA seq
437 aa
AA seq
DB search
MSFETLGLMAELLRAIDSQGYTTPTPIQRQAVPVILEGRDVLAGAQTGTGKTAAFTLPML
QLLSQRPRKGRAPRALVLTPTRELAAQVGESVETYGAHLKLRSAIIFGGVGINPQIEALK
RGVDILVATPGRLLDHAGQGTVDLSAIEILVLDEADRMLDMGFIHDIRRVMKLLPNKRQN
LLFSATYSNEIKRLADGLLHRPALIEVARRNTAAETVTQHVYRVDKDAKRDLLIHLIDAG
QWSQVLVFTRTKHGANRLAEQLNRADIEAAAIHGNKSQSARTRALAGFKDGSVRVLVATD
IAARGLDIDRLPHVVNYELPNVPEDYVHRIGRTGRAGEEGAAISLVGADEAKLLKDIERV
LNKTIPVLPMPTFEPKVLKAAPRPEQRSRATPGNKSKVKKKPAISRNAGSRAGDKPADGQ
RKRRRRNRPSQSPGAAR
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgagaccctcggcctcatggccgaactcctgcgtgccatcgattcgcagggc
tataccaccccgacccccatccagcgccaggcggtgccggtgatattggaaggccgcgat
gtgctggccggcgcccagaccggcaccggcaagaccgctgccttcacgctgcccatgctg
cagctgctcagccagcggccgcgcaagggcagggcgccgcgcgccctggtgctcactccc
acccgggagctggcggcgcaggtcggtgagagcgtggaaacctacggtgcacacctgaag
ctgcgctccgccatcatcttcggcggggtggggatcaatccgcagatcgaggccctgaag
cgcggcgtcgacatcctggtcgccacgccgggccggttgctggatcatgccggccagggc
acggtggatctgtccgcgattgagatcctggtgctggacgaggccgaccgcatgctggac
atgggcttcatccacgacatccgccgggtgatgaagctgctgccgaacaagcgtcagaac
ctgctgttctctgccacctactccaacgagatcaagcgtctggccgacggcctgctgcac
cggccggccctgatcgaggtggcgcggcgcaatacggccgccgagaccgtcacccagcat
gtgtatcgggtcgacaaggacgccaagcgcgatctgctgatccacctcatcgatgccggg
cagtggtcccaggtgctggtgttcacccgtaccaagcacggcgccaaccgtctggccgag
caactcaatcgggccgacatcgaagcggccgccatccatggcaacaagagccagagtgcc
cgcacccgggccctggccgggttcaaggacggcagcgtgcgggtgctggtggcgaccgac
atcgccgcccgcggcctggacatcgaccgcctgccgcatgtggtgaattacgaactgccc
aatgtgccggaagactatgtgcaccgtatcggccgtaccggtcgggccggtgaggagggc
gcggcgatttcactggtcggcgccgatgaagccaagctgctcaaggatatcgagcgggtt
ctgaacaagaccatcccggtgctgcccatgccgacgttcgagccgaaggtgctgaaagcg
gccccccgaccggagcagaggtccagggccactcccggcaataagtcgaaggtgaagaag
aagccggccatcagccgtaacgccgggtcccgtgccggtgacaagccggcggacggccag
cgcaagcggcgccggcgcaatcgcccgtcccagtcccccggcgctgcccggtaa
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