Thiohalobacter thiocyanaticus: FOKN1_2061
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Entry
FOKN1_2061 CDS
T05229
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ttc
Thiohalobacter thiocyanaticus
Pathway
ttc03030
DNA replication
ttc03430
Mismatch repair
ttc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ttc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOKN1_2061
03430 Mismatch repair
FOKN1_2061
03440 Homologous recombination
FOKN1_2061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ttc03032
]
FOKN1_2061
03400 DNA repair and recombination proteins [BR:
ttc03400
]
FOKN1_2061
Enzymes [BR:
ttc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FOKN1_2061
DNA replication proteins [BR:
ttc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FOKN1_2061
DNA repair and recombination proteins [BR:
ttc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FOKN1_2061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BAZ94441
UniProt:
A0A1Z4VS24
LinkDB
All DBs
Position
complement(2161453..2164956)
Genome browser
AA seq
1167 aa
AA seq
DB search
MPVSFVHLRLHTEYSLVDGIVRIKPLVKAARAAGMPAVAVTDQCNLFAMVKFYKAAIAGG
LKPLIGVDLWLENPNDPNQPHRLTLLCQNNQGYLNLSQLVSRTYTEGQHGGVPVLKRDWL
DGLTDGLIALSGGRQGDIGQALLAGHADVAADLLADWRRLFPDRFYLELQRTGREYEEDY
LHAAVDLAAQQGVPVVATNDVRFIQADGFEAHEARVCIHDGRTLDDPRRPRLYSDQQYLK
TPEAMAELFADIPEALENTVEIARRCNLELTLGENFLPEFPIPDGMTMEEYFNQQAHAGL
EQRLDKLFDRTAPEFAEQRRPYDERLQIELDVINQMGFPGYFLIVADFIQWAKSNGVPVG
PGRGSGAGSLVAYALTITDLDPIAYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIDYVA
RRYGREKVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDRIAKLIPFEIGMTLDKALAQEE
ELKRLVDEDEEVRGIIELAQSLEGLARNAGKHAGGVVISPTKLTDFTPLYCEHGSESIVS
QFDKDDVEAVGLVKFDFLGLRTLTIIDWALRSVNAIRREAGEPDVDIETIPLDDPDSFRL
LKGCKTTAVFQLESSGMKDLIRRLQPDSFEDIIALVALFRPGPLQSGMVDDFIARKHGRQ
RVEYPHPDLEPILAPTYGVILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMAKQR
EIFTRGALERGVEEKTATYIFDLMEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPAAFMA
AVLSADMDNTDKVVTLIDECRDMQLGVIPPSVNRSMYRFTAEGVDTVVYGLGAIKGVGQG
AIESMIAEREANGPFADLFDFCRRVDLRKLNRRVLEALIRAGALDEIGSNRATLMAQLPM
ALKLAEQHVRDADLGQNDLFGEAGPAPVDKPLDLVELPEWTEDERLTGEKETLGLYLSGH
PICRYEAELAHFTSGRIADVVPDSVPADGGNSRGQERTVTLAGLVIALRVRNTRRGRMAF
ATLDDRSARIEVRVFSDTFEAHRNLLARDRVLVIKGSLALDDYSGGYQLTADEIYDISQA
RAAFARRLVIEVDAARAGNGFMQHLAETLQPYREGRCPVWLNYHNDRARAHIMLGNEWRV
QPADELLHRLDELAGGEGRVQVEYNTH
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtctccttcgtccatctccgcctgcacaccgagtactccctggtcgacgggatt
gtgcgcatcaagccgctggtcaaggcggcgcgcgcggcgggcatgccggcggtggcagtc
accgaccagtgcaacctgttcgccatggtcaagttctacaaggcggccatcgccggcggg
ctcaagccgctcatcggcgtggacctgtggctggagaatcccaacgatcccaaccagccg
caccggctgaccctgctgtgccagaacaaccagggctatctgaatctgtcgcagctggtt
tcgcgcacctacaccgagggccagcacggcggcgtgccggtattgaaacgcgactggctg
gacggcctgaccgacggcctgatcgccctgtcgggcggacgtcagggtgacatcggtcag
gcgttgcttgccgggcacgccgatgtcgctgccgacctgctcgccgactggcggcgtctg
ttccccgaccgcttctacctggaattgcagcgcaccggccgcgagtacgaggaggactac
ctgcatgccgcggtcgacctggccgcgcaacagggcgtgccggtggtggccaccaacgat
gtgcgcttcatccaggccgatggcttcgaggcccacgaagcccgcgtctgcatccatgac
ggccgcaccctggacgatccgcgccggccgcgcctgtacagcgatcagcagtacctgaag
acaccggaggcgatggcggagctgttcgccgacatccccgaggcgctggagaacacggtc
gagatcgcccggcgctgcaacctggaactgaccctgggcgagaacttcctgccggaattc
ccgattcccgacgggatgaccatggaggaatacttcaatcagcaggcgcacgcaggcctg
gagcagcgcctggacaagctgttcgaccgcaccgccccggaattcgccgagcagcgcaga
ccctatgacgagcgcctgcagatcgaactggacgtcatcaaccagatgggttttcccggc
tactttctcatcgtggccgacttcatccagtgggccaagtccaacggcgtgccggtgggg
ccggggcgcggttcgggcgccggctcgctggtcgcctatgccctgaccatcaccgatctc
gatcccatcgcctacgacctgctgttcgagcgcttcctcaatcccgaacgcgtgtccatg
cccgacttcgacgtcgacttctgcatggagggacgcgaccgcgtcatcgactatgtcgcc
cgccgctacggccgcgagaaggtctcgcagatcatcacctacggctccatggcggccaag
gcggtggtgcgcgacgtcggccgggtgctcgggcatccctacggctttgtcgaccgcatc
gccaagctgatcccgttcgagatcggcatgaccctggacaaggcgctggcgcaggaggag
gaactcaaacgcctggtcgacgaggacgaggaggtgcgcggcatcatcgagctggcgcag
tcgctggagggcctggcgcgcaatgccggcaagcacgccggcggcgtggtgatctcgccg
accaagctgaccgacttcaccccgctgtactgcgaacacggctcggagagcatcgtcagc
cagttcgacaaggacgacgtcgaggcggtcggcctggtcaagttcgacttcctcggcctg
cgcaccctgaccatcatcgactgggccctgcgcagcgtgaacgccatccgccgcgaggcc
ggcgagcccgacgtggacatcgagaccattccgctggacgacccggacagcttcaggctg
ctcaagggctgcaaaaccaccgccgtattccagctcgagtccagcggcatgaaggacctg
atccggcgcctgcagccggacagcttcgaggacatcatcgccctggtcgcgctgttccgc
cccgggccgctgcagtcgggcatggtggacgacttcatcgcccgcaaacacgggcgccag
cgggtcgaatacccgcatcccgatctggagccgatcctggcgcccacctacggcgtgatc
ctgtaccaggagcaggtgatgcagatcgcccaggtgctggccggctacaccctgggcggc
gccgacctgctgcgccgcgccatgggcaagaagaagcccgaggagatggccaagcagcgc
gagatcttcacccggggcgcactggagcgcggggtggaggagaagaccgccacctacatc
ttcgacctgatggagaagttcgccggctacggcttcaacaagtcgcactcggcggcctat
gccctggtctcctaccagaccgcctggctcaaggcgcactatccggccgccttcatggcg
gcggtgctgtcggcggacatggacaacaccgacaaggtggtcaccctgatcgacgaatgc
cgcgacatgcaactcggcgtcatcccccccagcgtcaaccgttccatgtaccgtttcact
gccgagggcgtggatacggtggtctacggtctgggggccatcaagggcgtgggccagggc
gcgatcgaaagcatgatcgccgagcgcgaggccaacgggccgttcgcggacctgttcgat
ttctgccggcgggtggatctgcgcaagctcaaccgccgggtgctggaggcactgatccgg
gccggggcgctggacgagatcggctccaaccgcgccaccctgatggcgcagctgccgatg
gcgctgaaactggccgagcagcatgtgcgcgatgccgacctgggccagaacgacctgttc
ggcgaggccggaccggcgccggtggacaagccgctggacctggtcgaactgcccgagtgg
accgaggatgagcgcctgaccggcgagaaggaaaccctggggctgtatctcagcggccat
cccatctgccgctacgaggccgagctggcgcatttcaccagcgggcgtatcgccgatgtc
gtccccgacagcgtgccggccgacggcggcaacagccgcggtcaggaacgcactgtcacg
ctcgccggtctggtgatagccctgcgggtgcgcaacacccggcgcggccgcatggccttc
gccaccctggatgatcgcagcgcgcgcatcgaggtgagggtcttctccgacaccttcgag
gcccaccgcaacctgctggccagggaccgggtgctggtgatcaagggctcactggcgctg
gacgactattccggcggctaccagctcaccgccgacgagatctacgacatcagccaggcc
cgcgccgccttcgcccgccggctggtgatcgaggtcgacgccgcgcgtgccggcaacggc
ttcatgcagcacctggccgagaccctgcagccctatcgcgagggccgctgcccggtctgg
ctcaactaccacaacgaccgcgcccgggcccatatcatgctgggcaatgagtggcgggtg
cagcccgccgacgaactgctgcaccgcctggacgaactggccggcggcgaagggcgggtg
caggtcgagtacaatacccactga
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