Thiohalobacter thiocyanaticus: FOKN1_2252
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Entry
FOKN1_2252 CDS
T05229
Name
(GenBank) replication factor C subunit
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ttc
Thiohalobacter thiocyanaticus
Brite
KEGG Orthology (KO) [BR:
ttc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ttc03016
]
FOKN1_2252
Enzymes [BR:
ttc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FOKN1_2252
Transfer RNA biogenesis [BR:
ttc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FOKN1_2252
Prokaryotic type
tRNA splicing ligases
FOKN1_2252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAZ94627
UniProt:
A0A1Z4VSL4
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All DBs
Position
2366084..2367514
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AA seq
476 aa
AA seq
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MDPDRFTQLDATTWQIPQQGNMRVPGILYADRQLISDMDAKVWEQLTNVAALPGIVQAAY
AMPDAHWGYGFPIGGVAAFDPDQGGVVSAGGVGFDISCGVRTLTTGLSVDELQPHRETLA
DFLLYRIPAGVGSTGRIRLKDAEMTAMLEGGADWAVRQGYGRREDLERIEEHGRMAGAVP
EAVSERARKRQRDEMGTLGSGNHYLEVQAVSEIYDPEAATAFGLQPDAVVVSIHCGSRGL
GHQIGTEFLREMALSAQQYHIRLPDRELACAPLNSPLGERYLGAMRAGINCALANRQILT
HLTRDVFAHVLPEADLQLIYDVSHNTCKEETHTVGGEKRRLFVHRKGATRALGPGHPDLP
EAFLDSGQPVLIGGSMGTASYVLAGMATSEGRSFASACHGAGRAMSRHQATKRWRGEDLI
DELAGRGIIIRSHSYRGVAEEAPGAYKDVSAVVEAAEQAGLARKVARLRPLICIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggaccccgaccgcttcacccaactcgacgccaccacctggcagatcccgcagcagggc
aacatgcgggtgccgggcattctgtatgccgaccggcagctcatcagcgacatggacgcc
aaggtctgggaacagctgaccaatgtcgccgccctgcccggcatcgtgcaggccgcctac
gccatgccggacgcgcactggggctacggctttcccatcggcggcgtggccgccttcgat
cccgaccagggcggcgtggtctcggccggcggcgtgggcttcgacatctcctgcggcgtg
cgcaccctgaccaccggcctgagcgtggacgaactgcagccgcaccgcgagaccctggcc
gacttcctgctctaccgcatccccgccggcgtgggcagcaccggccgcatccggctcaag
gacgcggagatgaccgccatgctcgaaggcggcgccgactgggcggtacgccagggctac
ggccggcgcgaggacctggagcggatagaggaacacggccgcatggccggcgccgtgccc
gaggccgtctccgaacgcgcccgcaagcgccagcgcgacgagatgggcaccctgggctcg
ggcaatcactacctggaagtgcaggcggtgagtgagatctacgaccccgaggcggccacg
gccttcgggctgcagcctgatgccgtggtggtcagcatccactgcggctcgcgcgggctg
ggccaccagatcggcaccgagttcctgcgtgaaatggccttgagcgcccagcagtatcac
atccgcctgcccgaccgggaactagcctgcgccccgctgaactcgccgctgggggaacgc
tacctgggcgcgatgcgcgccggcatcaactgcgccctggccaaccgccagatactcacc
cacctcacccgcgacgtgttcgcgcacgtgctgcccgaggccgatctgcagctgatctat
gacgtctcccacaatacctgcaaggaggagacgcacacggtcggcggtgaaaagcgccgc
ctgttcgtgcaccgcaagggcgcgacccgggcgctggggcccggtcaccccgacctgccg
gaggcgtttctggacagcggccagccggtgctgatcggcggctccatgggcaccgcctcc
tatgtactggccggcatggcgaccagcgagggcaggtccttcgcctccgcctgccacggc
gccggccgcgccatgagtcggcaccaggccaccaagcgctggcgcggcgaagacctgatc
gacgaactggccggccgggggattatcattcgcagccactcctaccgcggcgtggccgag
gaggccccgggcgcctacaaggatgtcagcgccgtggtcgaggccgccgagcaggccggc
ctggcacgcaaggtggcacggctgcggccgttgatctgtatcaagggctag
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