Thiohalobacter thiocyanaticus: FOKN1_2714
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Entry
FOKN1_2714 CDS
T05229
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ttc
Thiohalobacter thiocyanaticus
Pathway
ttc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ttc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FOKN1_2714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttc03021
]
FOKN1_2714
03400 DNA repair and recombination proteins [BR:
ttc03400
]
FOKN1_2714
Enzymes [BR:
ttc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FOKN1_2714
Transcription machinery [BR:
ttc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FOKN1_2714
DNA repair and recombination proteins [BR:
ttc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FOKN1_2714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BAZ95084
UniProt:
A0A1Z4VV71
LinkDB
All DBs
Position
complement(2864105..2868328)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLVKPQGHLDDFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVVCEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFEAFVVIDPGMTTLERGQLLSDEAYLDTIEEFGDEFDARM
GAEAVFELLKSIDMQAEANRLREEIAATNSETKLKRLAKRLKLIESFLESGNKQEWMVME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKRMALELFKPFIFSKLIRQGVATTIKAAKKLVERESTEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRERMDAKGRGMAFSDLNELRRAYDNG
VVDLHARVQVRIEDSMINDAGEIVTEMKRVDTIVGRALIYEIVPRSLPFELVDQNMTKKV
ISRLINSCYRRVGLKETVIFADQLMYLGFRYATRSGVSFGADDMVIPEEKYDILGRAEEE
VKEIEAQYTSGLVTNGERYNKVVDIWSRTNDQVAKAMMAKLGSETVIDPEGNAVTQDSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVIQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVSQDLVVVEEDCGTENGLLMTPIVEGGDVVESLGERVL
GRVVAEDTYLPGKDELAIAAGTLIDEGWVEKLELMGVDQVKVRSAITCESRYGVCSQCYG
RDLARGHRVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSATVNNVDVKAAGTIRL
HNIKTVANKEGNLVAVSRSGEIGVVDANGRERERYKLPYGAVLSVNDGDAVEAGQIVANW
DPHTHPIVTEGGGRVRFSDFIEGVTVNRETDEITGLSSLIVSDPKQRGSAGKDLRPMVKL
VDEKGDELKIAGTDIPAHYFLPAGAIVGLEDGAPVEIGDVVARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTATFGKETKGKQRLVITPADGDAHEELIPKWRHVTVFEG
EHVEKGETIVDGEPNPHDILRLLGVTEMANYVVKEIQDVYRLQGVKINDKHIEVIIRQMM
RKVEILEPGDTRFLRGEQVEKAILLEENEKAEAEGKVPASYNILLLGITKASLATESFIS
AASFQETTRVLTEAATRGGRDELRGLKENVIVGRLIPAGTGLAHHDERRRLRHADLAGEA
AAAAFAEPAEVESAVESSAESPDESDS
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttactgaatctggtgaaaccgcagggtcatctggacgacttcgacgccatc
cgcatcggactggcgtcgcccgacatgatccggtcctggtcctacggtgaggtcaaaaag
cccgagaccatcaactaccgcaccttcaagccggagcgcgacggcctgttctgcgccaag
atcttcggtccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtggtctgtgagaagtgcggcgtcgaggtcaccctggccaaggtgcgccgcgaa
cgcatgggccatatcgagctggccagccccgtggcccacatctggttcctcaagtcgctg
ccttcgcgtatcggcctgctgctggacatgaccctgcgcgacatcgagcgggtgctgtac
ttcgaggcctttgtggtcatcgatcccggcatgaccacgctggagcgggggcagctgctc
tctgacgaggcctacctcgacaccatcgaggaattcggcgacgagttcgacgcccgcatg
ggcgccgaggcggtgttcgagctgctgaaatccatcgacatgcaggccgaggccaaccgg
ctgcgcgaggagatcgccgccaccaattccgagaccaagctcaagcgtctggccaagcgc
ctcaagctgatcgagtccttcctcgaatccggcaacaagcaggaatggatggtcatggag
gtgctgccggtgctgccgccggaactgcgcccgctggtgccgctggatggcggccgtttc
gccacctcggacctgaacgacctttaccgccgggtgatcaaccgcaacaaccgtctgcgc
cggctgctggagctcaacgcccccgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gagtcggtcgacgccctgctggacaacggccgccgcggccgtgccatcaccggcaccaac
aagcgcccgctgaagtccctggccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctgggcaagcgcgtcgactactccggccgttcggtcatcgtggtcggcccgacc
ctgcgcctgcaccagtgcgggctgcccaagcgcatggcgctggagttgttcaagcccttc
atcttctccaagctcatccgccagggcgtggccaccaccatcaaggcggccaagaagctg
gtcgagcgcgagagcaccgaggtctgggatatcctcgaagaggtcatccgcgagcatccg
gtgatgctcaaccgcgccccgaccctgcaccgcctgggtatccaggccttcgagccggtg
ctgatcgagggcaaggcgatccagctgcacccgctggtctgcgccgccttcaacgccgac
ttcgacggcgaccagatggcggtgcacgtgccgctgtcgctggaggcgcagctggaagcg
cgcaccctgatgatgtccaccaacaacatcctctcgcccgccaacggcgagcccatcatc
gtgccgtcgcaggacgtggtgctgggcctgtactacatgtcgcgcgagcgcatggacgcc
aagggccgcggtatggccttctcggacctcaatgaactgcgtcgcgcctatgacaacggc
gtggtggacctgcatgcccgggtccaggtccgtatcgaggacagcatgatcaatgacgcc
ggcgagatcgtcaccgagatgaagcgcgtcgacaccatcgtcggccgcgccctgatctac
gagatcgtgccgcgcagcctgcccttcgaactggtcgatcagaacatgaccaagaaggtc
atctcccggctcatcaattcctgttatcgccgggtggggctgaaggagacggtcatcttc
gccgaccagctgatgtacctgggcttccgctacgccacccgttccggtgtctccttcggc
gccgacgacatggtcatcccggaagagaaatacgacatcctgggccgtgccgaggaagag
gtgaaggagatcgaggcccagtacacctcgggtctggtcaccaacggcgagcgctacaac
aaggtagtcgatatctggtcgcgcaccaacgatcaggtcgccaaggccatgatggccaag
ctcggcagtgagacggtgatcgatcccgaaggcaatgccgtcactcaggattcgttcaat
tccgtgtacatgatggccgattccggcgcccgaggcagtgccgcccagatccgccagctg
gccggcatgcgcggcctgatggccaagccggacggctccatcatcgagacgccgatcacg
gcgaacttccgtgagggtctgaacgtcattcagtacttcatctccacccacggcgcacgc
aagggtctggccgataccgcgctgaagaccgccaactccggttacctgacccggcgtctg
gtcgacgtctcccaggacctggtggtggtcgaagaggactgcggtaccgagaacggtctg
ctcatgaccccgatcgtcgagggcggcgatgtggtcgagtcgctgggcgagcgcgtgctg
ggccgggtggtggccgaggatacctacctgccgggcaaggacgaactggccatcgccgcc
ggtaccctgatcgacgagggctgggtcgagaagctggaactgatgggcgtggaccaggtc
aaggtgcgttccgccattacctgcgagtcccgctacggcgtctgctcccagtgctacggg
cgcgacctggcccgcgggcatcgggtgaacagcggcgaggcggtcggcgtgatcgccgcc
cagtccatcggcgagccgggtacccagctgaccatgcgtaccttccatatcggcggcgcg
gccagccgttcggcgaccgtgaacaacgtcgatgtgaaggccgccggcaccatccggctg
cacaacatcaagacggtcgccaacaaggagggcaacctggtggcggtgtcccgctccggc
gagatcggcgtggtcgacgccaacggccgcgagcgcgagcgctacaagctgccctacggc
gcggtgctgtcggtcaatgacggcgatgccgtcgaggccggccagatcgtggccaactgg
gacccgcatactcacccgatcgtcactgaggggggcggccgggtgcggttctcggatttc
atcgagggcgtcacggtcaaccgcgaaaccgatgagatcaccggcctgtccagtctgatc
gtctccgatcccaagcagcgcggctcggcgggcaaggacctgcggccgatggtcaagctg
gtcgacgagaagggcgacgagctcaagatcgccggcaccgacataccggcccactacttc
ctgcccgccggcgccatcgtcgggctggaggacggcgccccggtggagatcggtgacgtg
gtggcgcgcatcccgcaggagtcctccaagacccgtgacatcaccggcggtctgccgcgc
gtggcggacctgttcgaggcccgcaaacccaaggagccggccattctggccgagatctcc
ggcaccgccaccttcggcaaggagaccaagggcaagcagcgcctggtcatcaccccggcc
gacggcgatgcgcacgaggaactgattcccaagtggcgccacgtcaccgtgttcgagggc
gaacacgtggagaagggcgagaccatcgtcgacggcgagcccaatccgcatgacatcctg
cgcctgctgggcgtgaccgagatggccaattatgtggtcaaggagatccaggacgtctac
cggctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcatccgccagatgatg
cgcaaggtggagatcctggagcccggcgatacccgcttcctcaggggcgaacaggtcgag
aaggcgatactgctggaggagaacgagaaggccgaggccgagggcaaggtcccggccagc
tacaacattctcctgctgggtatcaccaaggcctcgctggcgaccgaatccttcatctcg
gcggcctccttccaggagaccacccgggtgctgaccgaggccgccacccgcggcgggcgc
gacgaactgcgcggactgaaggagaatgtcatcgtgggtcgcctgatcccggcgggaacc
gggctggcgcatcacgacgagcgccgccgtctgcgtcatgccgacctcgccggagaggcc
gccgcggccgccttcgccgagcccgccgaggtggagtccgccgtcgagtcttccgccgag
tcgcctgacgagtcggattcctga
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