Caldanaerobacter subterraneus subsp. tengcongensis: TTE0138
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Entry
TTE0138 CDS
T00081
Symbol
Rho
Name
(GenBank) Transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
tte
Caldanaerobacter subterraneus subsp. tengcongensis
Pathway
tte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TTE0138 (Rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tte03021
]
TTE0138 (Rho)
03019 Messenger RNA biogenesis [BR:
tte03019
]
TTE0138 (Rho)
Transcription machinery [BR:
tte03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TTE0138 (Rho)
Messenger RNA biogenesis [BR:
tte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TTE0138 (Rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
ATPase_2
OB_RNB
AAA_25
Spore_III_AA
NACHT
AAA_14
DUF7440
AAA
ABC_tran
AAA_24
TnsD
Motif
Other DBs
NCBI-ProteinID:
AAM23442
UniProt:
Q8RDA3
LinkDB
All DBs
Position
137437..138903
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AA seq
488 aa
AA seq
DB search
MEFDINNLENLGLMELREIAKELGIKSITKYRKQQLREKIIEKVKEKEEEKLKQEEKIPE
ENKENKEENKEEGEEEKVQSVALSNNGLQSQQAFLKENLPMVKDLSDPLKELIQTQGDVV
AEGILDILPDGFGFLRVENFTQGPKDIYISQSQIRRFGLKVGDKVRGITRIPREGEKYSA
ILYVEAINDEDPEKAKKRIPFDELTPIFPNQKLRLETSPREFSMRLVDLIAPIGKGQRGM
IVAPPKAGKTTLLKQIANSISQNHPEVVLIVLLIDERPEEVTDMKRSIKGEVVYSTFDEL
PEHHIKVAEMVLEHAKRLVEYKRDVVILLDSITRLARAYNLVTPPSGRTLSGGIDPAALH
PPKRFFGAARNIEEGGSLTILATALVETGSRMDEVIFEEFKGTGNMELHLDRKLQERRIF
PAIDIYKSGTRKEELLLTQEELEAMWILRKAMSNLPPQEVTEMIIEKLIRTKSNAEFVNM
IRSQFYKS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
ttggagtttgatattaataatctggaaaatttaggtttaatggaattgagggaaattgcg
aaagagctgggcatcaagagtattacgaaatacagaaagcagcagttgagagaaaaaatt
attgaaaaagtaaaagaaaaagaggaagaaaagcttaagcaagaagaaaaaattccagag
gagaataaagagaataaagaagaaaataaagaagagggcgaagaggaaaaggttcaatct
gtggctcttagcaataacggcctccaatctcagcaggctttcttaaaagagaacttacct
atggtgaaggacctttctgaccctttgaaagagcttatacagacgcagggagacgtagta
gcagaagggattttggatattctgcctgatgggtttggatttttaagagtagaaaatttt
acacaggggccaaaggacatatatatttctcagtctcagataagaagatttggacttaaa
gtgggagacaaggtcagaggaatcactcgaattccgagagaaggagaaaagtattctgct
attttgtacgttgaggctataaatgatgaagacccagaaaaggccaaaaagagaattcct
tttgatgaacttacccctattttccctaatcaaaagttaaggcttgagacatcccctcgt
gagttttctatgaggctggtggacctaatagcgcctataggcaaaggtcagaggggaatg
attgtcgctcctcctaaagccggtaagacgactttgttaaagcagatcgccaatagcatt
tctcaaaaccatcccgaagtagttttaatagtccttttgatcgatgagaggcctgaagaa
gtaactgatatgaagaggtctataaaaggggaagtagtgtattctacttttgacgaactg
ccagagcaccacatcaaagttgcagagatggtcttagagcatgccaaaagattggtagaa
tacaaaagagatgtggttattttattggacagcattacaagattagcaagggcatacaat
ttggtgacaccaccttcaggaaggactctatcaggtggaattgaccctgctgctttgcat
ccgccgaagagattttttggggcagcaaggaacattgaagaaggcggaagcctcacgatt
ttggcgactgccttagttgagacgggaagccgtatggatgaagtgatatttgaagagttt
aaagggacgggcaatatggagctgcacttagatagaaagcttcaggaaagaaggatattc
cctgccattgacatatataaatccggtacgaggaaagaagagctgctgctcacgcaggag
gagctggaagccatgtggattttgagaaaagccatgtcaaatcttcctcctcaagaagtt
acagaaatgataattgagaaattgataaggacgaagtcaaatgctgagtttgtaaatatg
ataaggtcccaattttataaatcttga
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