Caldanaerobacter subterraneus subsp. tengcongensis: TTE0709
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Entry
TTE0709 CDS
T00081
Symbol
RtcB
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tte
Caldanaerobacter subterraneus subsp. tengcongensis
Brite
KEGG Orthology (KO) [BR:
tte00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tte03016
]
TTE0709 (RtcB)
Enzymes [BR:
tte01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TTE0709 (RtcB)
Transfer RNA biogenesis [BR:
tte03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TTE0709 (RtcB)
Prokaryotic type
tRNA splicing ligases
TTE0709 (RtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
TetR_C_9
DUF7425
Motif
Other DBs
NCBI-ProteinID:
AAM23971
UniProt:
Q8RBU9
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All DBs
Position
712367..713809
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AA seq
480 aa
AA seq
DB search
MAVDIIQGYTLVKDGVNKWRIPKFGKMRVDAVVYVNDSLKELLRDDQSLRQLVNAASLPG
VVEPVIGMPDIHEGFGLPIGGVMAIEEKGVISAGAVGYDINCGVRLIRSDLEADYFTKDI
LYKLIERIEHYVPTGIGKKGRHKGITRVIFDDVVHNGVEAVIKAGFGKKSDLEYIEEGGK
LEGADISAVSEEAQERGEEQLGTLGGGNHFIEIQKVEEILEENLAEKFGLFKGQLAVMIH
TGSRGFGHQIATDYTKILWEAAKRYGIEVPEKGLAAAPIKSKEGQNYYKAMAAAVNFAFS
NRQIIMFDVIRAFEDVLKKSEEEMGFKLVYDVAHNIAKWEVHGGKRMLVHRKGATRALPA
GHPQNPPSYRDTGHPALIPGSMGTGSYVVVGTEKAAETFYSVNHGAGRRLSRNQAKKISK
EEFERSMGDVVYNVRSYKDIVDESPLAYKDVETVVSVFEERGITIPVAKLIPLAVVKGAD
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggatattattcaaggctataccctggtgaaggatggggtaaataaatggaga
attcccaagtttgggaagatgagggttgacgctgtcgtctatgtaaatgatagtttaaaa
gagcttttgagagatgaccaatccttaaggcagcttgttaatgctgcaagcctccctggt
gtagtagaaccggtgattggcatgccggatattcacgaaggttttggacttccgataggg
ggagtcatggctatagaagaaaaaggggtgatttcggccggagcagtagggtatgatata
aattgtggtgtgagacttataaggtctgaccttgaggcagactattttacaaaagatata
ctgtataagttgatagagaggattgaacattacgttccgaccgggataggcaaaaaagga
aggcataagggtattacccgggtaatttttgacgatgttgtgcacaatggagttgaagcg
gtgattaaagcaggttttggcaaaaagtctgatttggagtatattgaagagggagggaaa
cttgaaggagccgatatttcggcggtatcagaagaagctcaggaaagaggagaagaacag
ctggggaccctgggaggaggcaatcactttatagaaattcagaaagttgaggagatttta
gaggagaatctggcagagaaatttgggctttttaaaggacagcttgctgtgatgattcac
acgggaagcagagggtttggccatcagattgctacggattatacaaagattctgtgggaa
gcagctaagaggtatgggattgaggtaccggaaaaagggcttgcagcagcccctataaag
tcaaaggaagggcagaattactataaggcgatggcggctgcggtgaattttgctttttca
aacaggcagataatcatgtttgatgtgataagggcttttgaggatgttttaaaaaaatcg
gaagaagagatggggtttaaacttgtgtatgacgttgctcacaatatcgctaagtgggaa
gtacatggggggaaaaggatgcttgttcacaggaaaggagctacaagggctttaccggca
ggacatccgcaaaacccaccttcctatagagatacaggacatcctgctctaattcctggc
agtatgggtacaggttcctatgtggtggtcggaacagaaaaagcagcagagacattttat
tctgtaaatcacggagcaggacgaaggctttctagaaatcaggctaagaagataagcaaa
gaggaatttgaaaggtctatgggagatgtggtgtacaatgtccgctcttataaagacatt
gtagatgaatctcctcttgcgtataaagatgtagaaacagtagtttctgtctttgaagag
agaggcattactatacctgttgcaaagcttattcctcttgcagttgtgaaaggggctgat
taa
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