Caldanaerobacter subterraneus subsp. tengcongensis: TTE1253
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Entry
TTE1253 CDS
T00081
Name
(GenBank) predicted hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tte
Caldanaerobacter subterraneus subsp. tengcongensis
Pathway
tte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TTE1253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tte03019
]
TTE1253
Messenger RNA biogenesis [BR:
tte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TTE1253
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
HI0933_like
Motif
Other DBs
NCBI-ProteinID:
AAM24477
UniProt:
Q8RAH0
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Position
1252767..1254431
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AA seq
554 aa
AA seq
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MAHKAKLKIIPLGGLNEIGKNMTVFEYGNDIIVVDCGLAFPDDEMLGIDLVIPDITYLLK
NREKVKAIVLTHGHEDHIGALPYVLKQLNVPIYGTRLTIGLVEYKLKEHGLLRDSKLITV
KPRETVEIGQFKVEFIRTSHSIADSAALAIHTPVGTVFHSGDFKIDFTPIDGEVPDLHRF
AQLGEKGVLVMLCDSTNIERPGYTMSERTVGETFDNLFRKAEQRIIVATFASNIHRVQQI
INSAQKYGRKVAISGRSMVNVVNVAMELGYLTVPEGLLIDLDEANKLPHNKVVIITTGSQ
GEPMSALTRMASSEHKKVEIVPGDTVIISASPIPGNERLISRVINQLFKKGANVIYEALA
DIHVSGHACQEEIKLLHTLIKPKFFIPVHGEYRHLVQHAKLAESLGMPPENIFVVDNGTV
LEFTKDSGRIAGTVTAGKVLVDGLGVGDVGNIVLRDRKHLAQDGLLVVVVTISKETGAVI
AGPDIISRGFVYVRESEDLMEESKNIVREVLAKCEKEEINEWATIKSMIKDNLSNFLYEK
TKRNPMILPIIMEI
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttggcgcacaaggcaaaactgaagataattcctttgggcggattaaatgaaattggcaaa
aacatgactgtattcgagtatggaaatgatatcatagttgtagactgtggcctcgctttc
cctgatgatgagatgttaggaattgaccttgtcattcccgatattacttatttattgaaa
aacagggaaaaagttaaagcaattgtgctcacccatggccacgaggaccacataggggct
ctgccctacgtgttgaagcagctcaatgttccaatttatggtaccagacttacaattggg
ttggttgagtacaaattaaaagagcacggacttttgagagacagtaagctaatcactgta
aaacccagagagacagttgagatcggccagtttaaagtagagtttataaggacttcccac
agcattgcagattcagcagctttggctattcacacgcctgtaggtacggtttttcactca
ggggatttcaagatcgattttacgcctatagacggggaagtgccggatttgcaccggttt
gcacaattgggagaaaagggcgtactggtgatgctgtgtgacagcacgaacattgaaagg
ccgggctatacgatgtctgaaagaacagtaggggagacttttgataatcttttcagaaag
gctgagcagaggataattgtagccacttttgcttcaaatattcacagggttcagcagata
ataaattccgcacagaagtacggaaggaaagtggccatatcaggaagaagcatggtaaat
gttgtgaatgtagccatggagcttggatatctgacagtgccagaagggcttttgatagat
ttggatgaggcgaataaacttccccacaacaaagtagtgataatcaccacaggaagtcaa
ggtgaaccgatgtcggcacttaccagaatggcctcttctgaacacaaaaaagtggagatt
gtccctggagacactgtcataatctcggcttctccaattccgggaaatgaaagattgatc
tcaagagttataaatcagcttttcaaaaagggtgccaatgtgatatatgaagctttagca
gatatacacgtttctggacatgcatgccaggaagagatcaaacttttgcacacccttata
aagccgaaatttttcatacctgttcacggcgagtacaggcacctggtgcagcacgcaaaa
cttgctgaaagccttggaatgccgccggagaacatctttgtagtggacaacggtacagtg
ctggaatttacgaaagattcaggtagaattgcaggtacagtcacagccggtaaggtattg
gtggacggattgggagttggagatgtgggcaatatagtcctgcgggacagaaagcacctt
gcccaggatggcctgttagttgtggttgtcacgatttccaaagagactggagcggtgata
gcagggccagatattatttcacgcggatttgtgtatgtgagagagtctgaagatttgatg
gaggagtccaagaacatcgtacgagaagtccttgcaaaatgtgaaaaagaagaaatcaac
gagtgggctactataaaatccatgataaaggataatttaagcaatttcctctatgagaaa
actaaaaggaatccaatgatactgcctattataatggaaatttaa
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