Caldanaerobacter subterraneus subsp. tengcongensis: TTE2300
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Entry
TTE2300 CDS
T00081
Symbol
RpoC
Name
(GenBank) DNA-directed RNA polymerase beta subunit/160 kD subunit (split gene in archaea and Syn)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tte
Caldanaerobacter subterraneus subsp. tengcongensis
Pathway
tte03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tte00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TTE2300 (RpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tte03021
]
TTE2300 (RpoC)
03400 DNA repair and recombination proteins [BR:
tte03400
]
TTE2300 (RpoC)
Enzymes [BR:
tte01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TTE2300 (RpoC)
Transcription machinery [BR:
tte03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TTE2300 (RpoC)
DNA repair and recombination proteins [BR:
tte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TTE2300 (RpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF5605
Pgp3_helical
Apocytochr_F_C
Peptidase_M23
MCM_C
Motif
Other DBs
NCBI-ProteinID:
AAM25442
UniProt:
Q8R7U7
LinkDB
All DBs
Position
complement(2180905..2184456)
Genome browser
AA seq
1183 aa
AA seq
DB search
MFKLKNFEAIKIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC
HCGKYKRVKYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVAHIWYVKGIPSRMGLLLDM
SPRALEKVLYFVSYVVIDPGDTPLTKKQLLSEKEYREYLEKYGNRFRAGMGAEAIKELLQ
EIDLEKLSKELRAEIKESTGQKRVRAIRRLEVVQAFIDSGNRPEWMILEVLPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKVYQCGLPKE
MALELFKPFVMKRLVDKGLAQHIKSAKRMVERVRPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIKLHPLVCPAYNADFDGDQMAVHIPLSMEAQAEARFLMLAANNIL
KPQDGKPVMTPTQDMVLGCYYLTADEDGVPGEGKYFSSPEEALMAYQLGYIHIHAKIKVK
MTREINGEKKSKVIETTVGKIIFNEAIPQDLGFVDRNNPETAFNLEINDLVDKSKLGKIL
DRVYRIHGPTKTAETLDKIKELGFKYSTKAAITISVSDMVIPKEKEKLLKEADEMVAKIE
AQFRRGLISEEERYEKVIETWNMTTEKVTEALMATLDKFNPIFMMAHSGARGSKNQIRQL
AGMRGLMADPSGRIIELPIRSNFREGLNVLEFFISTHGARKGLADTALRTADSGYLTRRL
VDVSQDVIVREEDCGTDEGIYVEEIREGNEIIEKLSDRIIGRIAAEDIVDSEGNVIVRRN
EMINEEEAEKIDKAGITRVKIRSPLTCRSRHGVCRMCYGRDLATGELVNIGEAVGIIAAQ
AIGEPGTQLTMRTFHTGGVAGVDITQGLPRVEELFEARKPKGLAVITEISGVVRINESKK
RREITVVDEENNISKTYLIPYGSRLKVRDGQWVQAGDELTEGSVNPHDLLKIKGIYAVQS
YLLQEVQKVYRLQGVEINDKHIEIIIRQMMKKVKVEDPGDTSMLPGELIDMFKFEEENKK
AIEKGLRPATGRRALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKVDPLIGLKENV
IIGKLIPAGTGLSRYRNITVVKKEDQEKKEEVKKEAVDAKASS
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
ttgtttaagcttaagaattttgaagccataaaaattggtctagcttctcctgaaaaaata
agggaatggtctcggggtgaagtgaaaaagcccgagaccatcaactacaggactttaaag
ccggaaagagatgggcttttctgcgagaggatttttggacctactaaggactgggaatgc
cattgtggaaagtataaaagagtgaagtacaaaggagttgtgtgcgacaggtgcggtgtt
gaagtgaccaggtccaaggtcagaagagagagaatggggcacattgagcttgctgcccct
gtcgctcacatatggtatgtgaaaggcattcccagccgcatggggcttttgcttgatatg
tctccaagggccttggagaaagttttgtactttgtatcttacgtagtcattgacccaggg
gatactcctcttactaaaaaacaactcctttctgaaaaagagtacagggaatatttggag
aaatatggaaatagatttagagctggaatgggagctgaggcgataaaggaactcctccag
gaaatagatctggaaaaacttagcaaagaattaagggcagagataaaggagtctacaggg
cagaaaagggtaagggctataagaaggttggaagtagttcaggctttcatagactctggc
aatcgcccagaatggatgattttggaggttcttcctgttattccgccagacttaaggcct
atggtacagctagacggcggccggtttgctacctctgatttaaatgacctttacagaaga
gtaatcaacagaaacaataggcttaaaaagcttttggatttaggggctccagatataata
gtgagaaatgaaaagagaatgcttcaagaagcagtagacgctcttatagacaatggcaga
agaggaagaccggttacaggtcctggaaatagacctttgaagtctctctctgatatgctc
aaaggaaaacagggaagatttagacaaaatctcttgggtaaaagggttgactattctggc
cgttcagttatcgtagtaggacctgaacttaaagtttatcagtgcggtcttccaaaggaa
atggccttagagctctttaaaccatttgtgatgaagaggttagtagacaaagggcttgca
cagcatattaaaagtgcaaaaaggatggtagaaagagtaaggcctgaagtatgggatgtc
ttagaagaagtcataaaggaacatccagtgcttttaaacagagcgcctacacttcacagg
ctggggattcaggcttttgagccagttcttgtagagggaagagccataaagcttcatccg
ctggtatgtcctgcttacaatgctgactttgacggagaccagatggctgttcacatacct
ctttcaatggaagctcaggcagaagctaggtttttgatgctggcagccaacaacatttta
aagccgcaggacggaaaacctgttatgacgcctacacaggacatggtgctcggttgctat
tacctcactgcagatgaagacggtgtgccgggtgaaggaaagtatttctcaagccctgaa
gaagctcttatggcttatcagttgggatatattcacatccacgcgaaaataaaagttaaa
atgacaagagaaataaatggagagaaaaagtccaaagttattgaaactacagtagggaaa
atcatatttaacgaagcgatacctcaggatttggggtttgtcgacagaaacaatcctgag
acagcctttaatcttgaaataaatgaccttgtggacaaatccaaactaggcaagatttta
gatagggtgtatagaatacacgggcctacaaagacagcagagactttagataagataaaa
gagctaggcttcaagtactcaactaaggcagcaattacaataagcgtttctgacatggta
ataccgaaagaaaaagagaagcttctaaaagaagcagatgaaatggtagctaaaattgaa
gctcagttcaggcgcggtttaatatccgaggaggaaaggtatgaaaaagtcattgaaaca
tggaatatgactactgaaaaggtcacagaagccttaatggcaactttagataaattcaac
cctatattcatgatggctcactcaggagctagaggtagtaaaaaccagataaggcagtta
gcaggtatgagaggcttgatggcagacccatctggacgaatcattgaacttcctataagg
tctaactttagagaaggtcttaacgttctggaattcttcatatccactcacggtgctaga
aaaggtcttgctgatacggcattgaggacagcagactccggttatttgacaagaaggctt
gtagatgtcagtcaggatgtgatagtgagagaagaagactgcggaactgatgagggcatt
tacgtcgaagagataagagaaggaaatgaaataattgaaaagctctcagatagaataata
ggaagaattgccgctgaagatatcgtagatagtgaaggaaatgtgattgtaagaagaaat
gagatgataaatgaagaagaggcggaaaagatagataaagctggaattacaagagttaag
ataaggtctcctctgacctgcagatccagacacggcgtatgcagaatgtgctatggaaga
gaccttgctacgggagagctagtaaatattggagaagctgtcggcataatcgctgctcag
gccataggtgaaccgggtacgcagcttacaatgaggactttccacacaggtggagttgca
ggagttgatattacacaaggtcttccaagggttgaagagctgtttgaggccagaaagccc
aaagggcttgcggtaatcactgaaatatctggtgttgtgagaattaatgaatctaagaaa
agaagagaaattacggtggtagacgaggaaaacaatatttctaagacttaccttatacca
tacggttcaaggctcaaagtgagagatgggcagtgggttcaggcaggagatgagctcaca
gagggttcagtgaatccgcatgaccttctcaagataaagggaatatatgcagtgcagagc
tatttgctgcaggaagtccagaaagtttacagactccagggtgttgagataaatgataaa
cacatcgagataataataaggcagatgatgaagaaggttaaagtagaagacccaggagac
acctcaatgcttcctggagaattaatagatatgttcaagtttgaagaagagaacaagaag
gctatagaaaagggattgaggcctgctacaggaagaagagcattgcttggtatcacaaaa
gcagctttagcgacagactccttcctgtcagctgcttccttccaggagacgacgagagtt
ctcacagatgcggcaataaaaggaaaagtagatcctctgataggacttaaagagaacgtg
ataataggaaaactcatacctgcgggtacagggctttccagatacaggaatataactgtg
gtgaagaaagaggatcaggaaaagaaagaagaagttaaaaaagaggctgttgatgcaaaa
gcgagtagttaa
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