Caldanaerobacter subterraneus subsp. tengcongensis: TTE2565
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Entry
TTE2565 CDS
T00081
Symbol
Mfd
Name
(GenBank) Transcription-repair coupling factor - superfamily II helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tte
Caldanaerobacter subterraneus subsp. tengcongensis
Pathway
tte03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TTE2565 (Mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tte03400
]
TTE2565 (Mfd)
Enzymes [BR:
tte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TTE2565 (Mfd)
DNA repair and recombination proteins [BR:
tte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TTE2565 (Mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
Cas3-like_C_2
SepF
UB2H
MFD_D3
DUF924
RecG_dom3_C
IstB_IS21
Cas_Csd1
Motif
Other DBs
NCBI-ProteinID:
AAM25689
UniProt:
Q8R759
LinkDB
All DBs
Position
complement(2452657..2456166)
Genome browser
AA seq
1169 aa
AA seq
DB search
MFTVQIEELKEVKAIEEELKQGRGPVLIYGLADSQKAHIAHYLMKKFNKKVLVITPDDVE
ARRIYEDLYSFNEGEASLFPKRDIVFYKIDAASHEIVFERLKVIKRLSEDRPYAVVASVD
ALLDKMPPFYLFRKYQFSLKIGDKIDLGKFLKKLEVMGYERVQMVEGKGQFSVRGGIIDI
FPSTEEYPFRIELFDDEVDSLRTFDVMTQRSIKTAEEVFIFPATEFIVEEEHIKRGISSL
SKDLNSYLSKIRKTKSGMAEKLREKFDEIMEEISQGKKRESIKVLINYFYEDLQSIKDYV
GEDAIVILDETNRIKQRVSNLQLEFNENFKNLLERGEVIPEQREIFFDYTEVEERLKNNF
LVIMNTLAKPEGELHPQRIVNFVSRSMHSFHGKMDLLVEDLKYYKATGYRVLLLSGNKDR
AKILKETLEEYGIDSVVVEDNEYDIQRGQVVIYPASITKGFEYVDAKFAVISDSEIFGQT
KRARKPVKMRNAERIKSFTELEVGSYVVHVNYGIGKYEGIEKIKVDGVIRDYLKIVYAGG
DVLFVPVEQLDLVQKYVGPTDNPPKLNKLGGGEWIRAKRKAKKAAEDLAKDLIELYAKRQ
MAKGHAFSPDTPWQKEFEDQFPYEETEDQLRCIKEIKEDMEKDKPMDRLLCGDVGYGKTE
VALRAAFKAVADGKQVAFLCPTTILAYQHYTNFLERFKEFPVKIEMLSRFRTPKEQAQII
KGLADGTIDIVVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSA
TPIPRTLHMSLIGIRDMSILENPPEDRFPVETYVVEFNEELIKDAILREVGRGGQVYFVY
NRVQGIEKMANFIKELVPNCRIAVAHGQMEENKLEQVMVDFLKGEYDVLVTTTIIETGLD
IPNVNTIIVYDADKLGLAQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEF
TEFGSGFKIAMRDLEIRGAGNLLGAEQHGHIDAVGYDLYLKLLEEAIRNLKGEQPKEEIT
TTIDLKVSAYIDSSYIEDENLRLEMYKKIASIESREDMMEVAEELIDRFGDYPKPVEALL
DIAYIKAVASKLHMVEISEKSSGVILKFKDKDSVDMETVEKMVREYKGNLTFSSQYPPYL
TYKYNKKETLLKELIELLEKMKDLQLAKK
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgtttacggtgcagattgaagaattaaaagaagtaaaagcgatagaggaagagttaaag
caaggaagaggacctgttctgatatacggccttgcagattctcaaaaagctcacatagca
cattatctcatgaagaaatttaataaaaaggtcctagtgataacccctgacgatgtggag
gcaaggagaatatacgaagacctgtactcctttaatgaaggagaggcttctcttttccct
aaacgggatatagtgttttacaaaatagacgcagcaagccacgaaatcgtatttgagaga
cttaaagtgataaaaaggctttctgaagataggccttatgctgttgttgcttccgtagat
gctttacttgacaagatgcctcctttttacctttttagaaagtaccagttcagcctgaag
attggtgacaaaattgatttaggaaagtttctaaaaaagttagaggtaatgggatatgag
agagtgcagatggtggaagggaaagggcagttcagcgtaagaggcgggataatcgatatt
tttccttctactgaagagtatcctttcaggatagagctttttgacgatgaagtggattct
ttgaggacttttgatgtcatgacacagaggtctattaaaacagcagaagaggtttttatc
ttcccggctactgaatttatagtggaagaagaacacataaaaagaggaatatcttctctg
tcaaaggacttaaattcatatctttcaaaaatcaggaagacaaaaagtggaatggccgaa
aagttaagagagaagtttgacgagataatggaagagataagccaggggaaaaagagggag
agcataaaggtactcataaactatttttacgaagaccttcaatctatcaaagattacgta
ggagaagatgctattgtaattttggatgagacaaacaggattaagcagagggtaagtaat
ctgcaattagaatttaatgaaaatttcaaaaatttactagaaagaggagaagtgatccct
gagcagagagaaattttctttgactacactgaagtagaggaaaggctcaaaaacaatttt
ttggtaataatgaacacattagcgaagccggagggagaacttcacccgcaaaggattgtt
aattttgtatcaaggtctatgcactctttccacggaaaaatggaccttcttgtggaggac
cttaagtactacaaagcgactggatatagagtgcttcttttaagcggcaataaggatagg
gcaaagattttgaaggagactttggaggagtacggcattgactctgttgtggtggaggat
aatgaatatgacatacaaagagggcaggtggtgatataccctgcttccatcacaaaaggg
tttgaatacgtggatgctaaatttgcggttataagcgatagcgaaatatttgggcaaact
aagagggctagaaagcctgttaagatgagaaacgctgagaggataaagagttttactgag
ttggaagtgggctcctatgtagtgcatgtcaattacggcattggcaagtatgaagggata
gagaagataaaggtggacggagtcataagggattatttgaagatagtttacgccggaggc
gatgtgctatttgtgcctgttgagcaattagaccttgttcaaaagtacgtagggcctact
gacaaccctccaaagcttaacaagcttggaggaggcgagtggataagagctaagagaaaa
gctaaaaaggcggcagaagacttggcaaaggatttaatcgagctttacgctaaaaggcag
atggcgaaaggacatgctttttctcccgatacgccgtggcagaaggagtttgaggaccag
tttccctatgaagagactgaagaccagttaaggtgcataaaagagatcaaagaagatatg
gaaaaggataagccaatggacagacttctctgcggagacgtgggttacgggaaaacagag
gtggctttaagggctgcttttaaagcggtggcggatggtaagcaggtggcgtttttgtgc
cctactactattttagcttatcagcattataccaattttctggaaaggtttaaggagttc
cctgtcaagatagagatgttaagccgcttcaggactccaaaagagcaggctcagataatt
aaagggctggcggacgggactattgacatagtagtcggaacccacaggcttttgcaaaac
gatgtgaaatttaaggatttggggcttttgataatagacgaggagcagaggtttggggtg
gtccacaaggaaaagattaaaaagcttaaggaaaacatagacgttttgactctttctgca
acgcctatacctaggacactgcacatgtccttaattggaattagggatatgagcatactg
gaaaatcctcctgaggacaggtttcctgtggagacctatgtggtggaatttaacgaagag
ctcataaaggacgctattctaagagaagtgggaagaggaggacaggtgtactttgtatac
aacagagtacaggggatagagaaaatggctaattttataaaggaattggtgccaaattgc
agaattgcagttgctcacgggcagatggaggaaaacaagctggagcaggttatggtggat
ttcttgaaaggggaatacgatgtacttgtgactaccactataattgagacagggcttgac
ataccaaatgtgaataccataatagtgtacgatgcggataagctggggcttgcacagctt
tatcagctgaggggaagggtaggaaggtcaaataggctggcttacgcttattttacctac
agaaaagataaggtgctaagcgaggtggcagaaaagaggctggaagccataaaagagttt
actgaatttggttcaggttttaaaattgccatgagggatttggagataagaggagcggga
aatttgctcggtgcagaacagcacgggcacattgatgccgttggctatgacctttatctt
aagcttttagaagaggccataaggaatctcaaaggggaacagccaaaggaggaaataact
accactatagatttaaaagtgagcgcctacatcgattcctcttacattgaggatgaaaac
ttaaggcttgaaatgtacaagaagatagcttctatagagtcaagagaggatatgatggag
gtagcagaagagcttatagacaggtttggcgattatccaaagcctgttgaagcactttta
gatatagcctatataaaagcggttgcgtcaaaacttcacatggtggaaataagtgaaaaa
tcgagtggcgtaattttaaagtttaaagataaagactctgttgacatggaaactgtagaa
aaaatggtaagagagtacaagggcaacctcactttttcaagccagtatccgccctatctt
acttataaatacaacaaaaaagagactttgctgaaagaattgatagaacttttggagaaa
atgaaagatttgcagttggcaaagaaataa
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