Thermogutta terrifontis: THTE_0839
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Entry
THTE_0839 CDS
T05034
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ttf
Thermogutta terrifontis
Pathway
ttf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THTE_0839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttf03019
]
THTE_0839
03016 Transfer RNA biogenesis [BR:
ttf03016
]
THTE_0839
Enzymes [BR:
ttf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
THTE_0839
Messenger RNA biogenesis [BR:
ttf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
THTE_0839
Transfer RNA biogenesis [BR:
ttf03016
]
Prokaryotic type
tRNA degradation factors
THTE_0839
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
HTH_27
DsrD
Motif
Other DBs
NCBI-ProteinID:
ASV73441
UniProt:
A0A286RBU7
LinkDB
All DBs
Position
complement(811390..813729)
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AA seq
779 aa
AA seq
DB search
MKQAMEELQNAILEHVRSPKYQPVKPRAIAKALQIPSEEAHLVKKAVKELVKAGLLEFGS
GHLVYLAGQRKTDDSPYRGGEIIGIFRRKEAGHGFVRPKAKPGDTEPPEDIFIPADWAGD
ASTGDLVRVRLAHRHRRGERMLAGQIVEILERQNSRFVGTYFEHDGQGFVQVDGTVFAQP
IYVGDPGARGVRPDDKVVIEMLRFPSHHRSGEGVIVEVLGPLGKPGVDTLTIMREFNLPE
EFPPDVLEEARAQAAMFEETIPPDRYDATHETTITIDPEDARDFDDAISLERREDGTWVL
GVHIADVAYFVPPGSAIDREARERATSVYLPDRVIPMLPELLSNGLASLQPGKLRFTKSV
YIEYTPDGVKTDVKIYRSVIRSDKRLTYEQVDAFLENPEAYKKAWGTKVHDLLLRMRDLA
RILRQRRRERGALELVMPEVKVNLDRRGRVIGAHLVPNTESHQMIEEFMLAANESVAETL
RDRGWLFLRRIHKPPAERKLRLLREFVEALGFPPRDLEDRFGLQGLLEYATGKPQQYAVH
YAVLRSLQRAIYSPLEEGHYALASECYCHFTSPIRRYPDLTIHRLVDALLLGKNPRINPA
ELVALGEHCSDREERAEAAERELTRLKLLSFLSERIGMEMEGIITGVEKYGLFVQGVALP
ADGFIPVEALQDDYYDYDRTSHSLVGRRKGNQFRLGDLVQVAVAHVDLERRQLDFRLIAH
RGHPTPGIVEESLAGFHNGKKATKKNRHRSLSQRVNGTEMSTRRANKAGGGRSARKKSK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaagccatggaagaactgcaaaacgccatcctggaacacgtgcgatcgcccaag
tatcaaccggtcaagccgcgggcgatcgccaaagcgctgcaaatccccagtgaagaggcc
cacctagtcaaaaaggcggtcaaagagctggtcaaagccgggctgctcgaattcggatcg
ggacatctcgtgtacctggcaggtcagcgcaaaaccgatgattctccgtatcggggcggt
gaaatcatcggaatttttcgccgcaaagaggcagggcacggatttgttcggcccaaggcc
aaacccggcgacaccgagccccctgaggatatcttcatcccggcagactgggccggggac
gcctccaccggcgatcttgtgcgggtacggctggcccatcgtcatcggcgtggagaacgc
atgctggccggtcaaattgtggaaatcctcgaacggcagaattcgcgtttcgtcggcacc
tattttgagcatgacgggcagggttttgtccaggtggacgggaccgtattcgcccagccg
atctacgtgggagatcccggcgcgcgaggtgtccggccggacgacaaggtcgtcatcgag
atgctccgcttccccagccatcatcggagcggtgaaggtgtgatcgtggaggtgcttggc
cccttgggcaagccgggcgtggacaccctcacgattatgcgggaattcaatctgccggag
gaatttccgcccgacgttctggaagaagcccgggcccaggcggcgatgtttgaagaaact
attccgcccgaccgctacgacgcaacccacgaaacaacgatcacgatcgaccccgaggat
gcccgcgacttcgatgacgcgatttcccttgagcgccgcgaggacggcacgtgggtgctg
ggggtgcacattgccgatgtggcctactttgtccctcccggctcggccatcgaccgagag
gcgcgggaacgggcaaccagcgtctacttgcccgaccgcgtcatccccatgttgccggaa
ctgctctccaatggcctggcaagtttgcagccgggcaaactccggttcaccaagtcggtt
tacattgaatacacacccgatggtgtcaaaaccgatgtgaaaatctaccggtcggtcatc
cgcagcgacaaacgcctcacctacgagcaggtggatgcatttctggagaatccagaagct
tataagaaagcgtggggcacgaaagtccatgaccttcttctacggatgcgcgatctcgcc
cggattctccgccagcgacgacgcgaacggggagccctggaacttgtcatgcccgaggtc
aaagtgaatctcgatcgtcgcggtcgggtcatcggcgcgcatctggtgccgaacacggaa
agccatcagatgatcgaggaattcatgctggccgccaatgaaagcgtggccgagacgctt
cgcgatcgcggctggttgtttctgcgacgaatccataaaccgccggccgagcgcaagctc
cgcctgctgcgggaatttgtggaggcactcggatttcctcctcgcgatctggaggaccgt
ttcggtctgcagggactgctggagtacgccacgggcaagccccaacagtatgcggtccac
tacgcagtcttgcgatcacttcagcgggccatctacagccctctggaagaaggccattac
gccctggcgagcgagtgctactgccacttcacgtcgcccatccggcggtatcccgacctg
acgattcaccggctggtggacgccctcctgctggggaagaacccgcggatcaatcccgcg
gaactggttgctcttggtgaacattgttcggatcgggaagaacgtgccgaggcggcagag
cgggagttgacgcgattgaaactcctctccttcctcagcgagcgaatcggcatggagatg
gaagggatcatcaccggcgtcgaaaaatatgggctgtttgtccagggagttgctcttccc
gcggatggcttcatccccgtggaagccctccaggacgactactacgattacgatcgcact
tcacactccctggtcggccggcgcaagggcaatcagtttcggctgggagaccttgtccag
gtggcggtggcgcatgtcgatctggaacgccgccagctcgattttcggctcatcgcccac
cgcggccatcccacgccggggatcgtggaagagtccctggccggatttcataatggcaaa
aaggcgaccaagaagaatcggcaccgctcgctatctcaacgggttaacgggacggagatg
agcacacggcgtgcaaacaaagcgggcggcggacgttctgcgagaaaaaagtcaaaataa
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