Tenacibaculum tangerinum: P8625_06680
Help
Entry
P8625_06680 CDS
T09624
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ttg
Tenacibaculum tangerinum
Pathway
ttg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ttg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P8625_06680 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttg03021
]
P8625_06680 (rpoC)
03400 DNA repair and recombination proteins [BR:
ttg03400
]
P8625_06680 (rpoC)
Enzymes [BR:
ttg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P8625_06680 (rpoC)
Transcription machinery [BR:
ttg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P8625_06680 (rpoC)
DNA repair and recombination proteins [BR:
ttg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P8625_06680 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WGH76826
LinkDB
All DBs
Position
complement(1545037..1549311)
Genome browser
AA seq
1424 aa
AA seq
DB search
MARKNEKYTVKKFNKISIGLASPESILEASKGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKM
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNAEGEPLQKMDFLTEEEYLDILDELPQENMY
LEDSDPNKFIAKMGAECLIDLLQRIDLDALSYELRHKANTETSKQRKNEALKRLNVVEAF
RESQQNRENNPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLYECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDR
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIRLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERKSTPEV
PIKGEGLTFYSPEEVTIAYNEGKVDLNAGVKVRTKDFNENGELVTQLIETTVGRVLFNEV
VPEQAGYINEVLTKKSLRGIIGNILKVTDIPSIGKFLDDIKGMGYKFAFQGGLSFSLGDI
IIPEEKHSMIAEANKEVDVIVMNYNMGMLTQKERYNQVIDVWGSTNNRLTELSMKRLRED
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNEEDCGTLRGLEVSALKKND
EIVESLSERIAGRTALYDVYAPSSDELLVEAGELITPVLADKIDASGIDKVEVRSALTCE
SEKGICEKCYGQSLSTGKKVQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGNISEENK
LIARFDGNVAIDDLRTVKGKDNEGTEVDIVISRTAEIKIIDKKTNITLSTNIIPYGSIIF
DKDRKTIKKGQVVCQWDPFNGVIVSEFEGKVKFDNLEQGINYSVEIDEQTGKQEKVITDS
KNKKIIPSLIIEDADGNALRSYSLPVGAHLIVNDGDKVETGKTLVKIPRKSGKAGDITGG
LPRVTELFEARNPSNPAVVAEIDGVVSFGKIKRGNREIIIESKTGDVKKYLIKLSNQILV
QENDFIKAGMPLSDGAITPIDILNIKGPSAVQEYLVNEIQEVYRLQGVKINDKHFEVVVR
QMMRKVRIIDSGDTLFLENQLVHKTDFIKENDEVYGMKVIEDSGDSTNLKAGQIVTARQL
RDENSLLRREDKNLVVARDAQPATAEQVLQGITRASLQTKSFISAASFQETTKVLNEAAV
NGKVDHLEGLKENVIVGKRIPAGTGMRAYEDIIVGPKDEIEQSL
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaaaaacgaaaaatacactgttaagaagtttaacaaaatttcaataggttta
gcatcacccgagtctattttagaggcttctaaaggagaggtgttaaaaccagaaactatt
aactaccgtacacacaaaccagaaagagatgggttgttttgtgagcgtatcttcggtcct
gtaaaagactatgagtgtgcgtgtggtaaatataaaagaattcgatataaaggtatcgtt
tgtgaccgttgtggtgttgaagttactgagaaaaaagtacgtagagatagagtaggacac
attaacctagtagtaccagtagcacatatttggtactttagatcattgcctaacaaaatg
ggataccttttagggttgccctctaagaagttagacatgattatttactacgagcgttac
gtagtaattcaaccaggtattgctaaaaatgccgaaggagagccattacaaaaaatggat
ttcttaactgaggaagaatatttagatattctagatgaacttccacaagaaaatatgtac
ttagaagattctgaccctaataagttcattgctaaaatgggagcagaatgtttaatcgat
ttattacaaagaatcgacttagacgctttatcatacgagttacgacacaaagccaatacc
gaaacttcaaaacaacgtaaaaacgaagccttaaaacgtttaaatgttgttgaagcattt
agagaatctcaacaaaatagagagaacaatccagaatggatgattatgaaagtaattccg
gtaattccaccagaattacgtccattagtaccattagatggaggtcgtttcgcaacatca
gacttaaatgatttataccgtcgtgtaattatccgtaacaatcgtttaaagcgattgatg
gaaattaaagcaccagaagtaattttacgtaacgaaaagcgtatgttacaagaatcggta
gattcattatttgacaacacacgtaaatcttcagcagtaaaaacagagtctaacagaccg
ttaaaatcattatctgatagtttaaaaggaaaacaaggacgtttccgtcaaaacttatta
ggtaagcgtgttgattattctgcacgttcggtaattgttgttggaccagagttaaaatta
tacgaatgtggattgccaaaagacatggcggctgaattatacaaaccttttgttattcgt
aaattaatcgaaagaggaattgttaagacagtaaaatctgcaaagaaaataattgataga
aaagaacctgttgtttgggatatcttagaaaatgtaattaaaggacacccagttttatta
aaccgtgctcctaccttacaccgtttaggtattcaagctttccaaccaaaattaattgaa
ggaaaagcaattcgtttacacccattagtatgtacggcattcaacgccgatttcgatgga
gatcaaatggcggttcacttaccattaggaccagaagctattctagaagcacaattatta
atgctagcttctcataatatcttaaaccctgctaacggagcaccaattacggtaccttca
caggatatggttttagggttgtactacatgacaaaagaaagaaagtcaactccagaagtt
cctattaaaggagaaggattaactttttattctccagaagaagtaacgattgcttacaac
gaaggtaaagtagacttaaatgcaggagtaaaagtaagaacgaaagactttaacgaaaac
ggagagttagtaacccaattaattgaaactacggtaggtagagtattattcaacgaagta
gtaccagagcaagcaggatatatcaatgaggtattaactaaaaaatcgttgcgtggaatt
attggtaatatcttaaaagtaaccgatattccatcaataggaaaattcttagatgatatc
aaaggaatgggatataaatttgccttccaaggtggtttatcattctcattaggagatatc
attatcccagaagaaaaacatagcatgattgccgaagctaataaagaggtagacgtaatc
gttatgaactataacatgggtatgttaacacagaaagaacgttacaatcaggtaattgat
gtttggggttctaccaacaaccgattaactgaattatctatgaaacgtttacgtgaagac
caacaaggatttaactcggtatttatgatgttagattctggagcccgtggatcgaaagaa
cagattcgtcagttaacaggtatgcgtggattaatggcgaaacctaaaaaatcgactgcc
ggaggtggagagattattgaaaacccaattttatcaaactttaaagaagggttatcaatt
ttagaatactttatctcaacgcacggtgcacgtaaaggtcttgccgataccgcattaaaa
actgccgatgcagggtatttaacacgtcgtttggtagatgtatctcaagatgttattgta
aacgaagaagattgtggtaccttaagaggattagaagtttctgcattaaagaagaatgat
gaaatcgttgaatctttaagtgaaagaattgcaggacgtaccgcactatatgatgtgtat
gcaccttcttctgatgaattgttagtagaagcaggagagttaattactccagttttagca
gataaaatagatgcttcaggaatcgataaagtagaagtacgttcggcattaacatgtgag
tctgaaaaaggaatctgtgaaaaatgttacggacagagtttatcaactggtaaaaaagtt
caaagaggtgaagctgtgggtgtaattgctgcacagtcgattggagaaccaggtactcag
ttaaccttacgtacgttccacgttggtggggttgcaggtaacatttccgaagaaaataaa
ctcatagcgaggttcgacggaaacgtagctatcgatgatttaagaacagttaaaggaaaa
gacaacgaaggaactgaagtagacatcgtaatttctcgtactgcagaaattaaaattata
gataagaaaacgaacattaccttaagcacgaatattattccttacggttctattattttt
gataaagatcgaaagacgattaaaaaaggacaggtagtttgtcaatgggatccatttaac
ggagttattgtatcggagtttgaaggaaaagtaaagtttgacaatttagagcaaggaatc
aattactctgtagaaattgacgaacaaacaggtaagcaagaaaaagtaattaccgattct
aaaaacaagaaaattattccttctttaattattgaagatgctgatggaaatgcattgcgt
tcatacagtttacctgtaggcgctcacttaattgtaaatgatggagataaagttgaaact
ggtaaaacattagtaaaaattcctcgtaagtctggtaaagcaggagatattacaggaggt
ttaccacgtgtaacagaattatttgaagcacgtaacccttctaatccagcggtagtagca
gaaattgatggagtagtttcatttggtaaaattaagcgtggtaatcgtgaaattattatc
gaatctaagactggtgatgttaagaaatacttaattaaattatcgaaccaaatcttagtt
caagaaaacgactttatcaaagcaggaatgccattgtctgacggagctattacgcctatc
gatatcttaaatatcaaaggaccttcagcagtacaagagtacttagtaaacgaaattcaa
gaagtatatcgtttacaaggggtgaagattaatgataagcatttcgaggtagttgtacgt
caaatgatgcgtaaagtaagaattattgattcaggtgataccttattcttggaaaatcaa
ttagttcataaaactgacttcatcaaagaaaacgacgaagtttacggaatgaaagttatt
gaagattcaggagattctactaacttaaaagcaggacaaatagttacggcgagacagtta
agagatgaaaattctttattacgtagagaagataaaaacttagtagtagcacgtgatgct
caaccagcaacagccgagcaagtattgcaaggtattacaagagcatcgttacaaacgaag
tcatttatctcggctgcatcgttccaagaaactactaaagtattaaacgaagccgctgta
aacggtaaagttgatcatttagaaggattgaaagaaaatgtaattgtaggtaaacgtata
ccagcaggtacaggaatgagagcttatgaagacatcatcgtcggacctaaagatgaaata
gagcaaagtttatag
DBGET
integrated database retrieval system
