KEGG   Tenacibaculum tangerinum: P8625_12755
Entry
P8625_12755       CDS       T09624                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
ttg  Tenacibaculum tangerinum
Pathway
ttg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ttg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    P8625_12755
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ttg03019]
    P8625_12755
Enzymes [BR:ttg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     P8625_12755
Messenger RNA biogenesis [BR:ttg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     P8625_12755
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Cas3-like_C_2 AAA_30 Helicase_RecD CMS1
Other DBs
NCBI-ProteinID: WGH74938
LinkDB
Position
complement(2853795..2855027)
AA seq 410 aa
MQFSDLQLSKSIVKALSEERHHTPTLVQQKVIPLVLDKKDVIVAAQTGTGKTAAFALPII
QELSKEEDVEKRAKKIKALVVSPTRELAIQIQENFKAYSKYTNLRTTVIYGGVATQPQKD
VLEKGVDILIATPGRFIDLHQQGSIDIRQLKTLVLDEADLMLDMGFIEDVQKIEELCPRK
KQTLLFSATMPEKVSDLAKSMLRNPEKVDISPAETTATNIGQLLYYTPKKHKVDLCLHLL
RNTIKGRIIIFRRTKFGVDKLEKTLQKNGYKVTSVHGDKSQNLRNQAIEDFKNNKANILI
ATDVAARGIDVSKVDAVINVDLPNIPETYVHRIGRTGRAGKSGIAFSLCSADETSYIKAI
QEYINRSIKIIEDHPFPLAKPKPKKQPNTISKHKKGRKSEASKKKKKRWY
NT seq 1233 nt   +upstreamnt  +downstreamnt
atgcagttttcagacctacaacttagcaaatctatcgtaaaagcactttccgaagaaaga
caccatacgcccaccttagtacaacaaaaagtaattcctttggtactcgacaaaaaagat
gtaattgtagctgcgcaaacaggtacaggtaaaaccgctgcatttgccctgcctatcatt
caagagctttctaaagaagaagatgttgagaaaagagcaaaaaaaataaaagcactggtt
gtaagccctactcgcgaattggcaattcaaattcaagaaaattttaaagcatacagcaaa
tacactaacctaagaaccacggttatttatggtggtgtagctacacaaccgcaaaaagac
gtgttagaaaaaggcgtggatattttaatcgctaccccaggtcgttttatcgacttacac
caacaaggaagtattgatatccgtcagctaaaaacattggtactcgatgaagccgattta
atgctcgatatggggtttattgaggatgtgcaaaagattgaagaactatgtccgcgcaaa
aaacaaaccctattgttttcggcaacgatgccagaaaaagtgagtgacctagctaaatcg
atgctacgcaatcctgaaaaggtcgatatttcacctgcggaaactaccgcaacaaacata
ggccaattactatattacactcctaaaaaacataaggtcgatttgtgtttgcacctgcta
cgcaataccataaaaggtcgtattattatctttcgtcgtaccaaatttggagttgataaa
ctcgaaaaaacattgcaaaaaaatggctacaaagtaaccagtgtacatggcgacaaatcg
caaaacttacgcaatcaggctatcgaggactttaaaaacaataaagccaacattttaatt
gctaccgatgtggctgctcgtggtatcgacgttagtaaagtagatgcggtgattaatgtt
gacttacccaacattcctgaaacctatgtacacagaattggtagaaccggtagagcaggc
aaatctggaattgccttttcgttgtgtagcgccgatgaaacttcgtacattaaagctatt
caagaatatataaatcgttctataaaaattatagaagaccatccgtttccattagccaaa
ccgaagcctaaaaagcaacccaacaccattagtaaacacaagaaaggaagaaaatcagaa
gcctctaaaaagaagaaaaaacgctggtattaa

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