Thermus thermophilus HB27: TT_C1426
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Entry
TT_C1426 CDS
T00170
Symbol
rtcB
Name
(GenBank) rtcB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tth
Thermus thermophilus HB27
Brite
KEGG Orthology (KO) [BR:
tth00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tth03016
]
TT_C1426 (rtcB)
Enzymes [BR:
tth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TT_C1426 (rtcB)
Transfer RNA biogenesis [BR:
tth03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TT_C1426 (rtcB)
Prokaryotic type
tRNA splicing ligases
TT_C1426 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AAS81768
UniProt:
Q72HR0
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All DBs
Position
1348331..1349761
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AA seq
476 aa
AA seq
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MFFEKIAPYTYRIPRQGKMRVDAVFFASKEILKDLEAENYASLQQLMNVATLPGIVEPAL
AMPDIHWGYGFPIGGVAAFDPEEGGVVSPGGVGFDINCGVRLLASHLTLEDLLPRQKELA
DALYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESEGRLPWAN
PDKVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFKGQVTVLIHTGSRG
LGHQVCQDYVERFLKAAPRYGIELVDKQLAAAPIKSPEGQDYLQAMAAAANFAFANRQLI
AHFVREAFEKVGFTPRDHGLRVLYDLAHNNAKLEEHGGRRVLVHRKGATRAFGPGHPEVP
EAYRRVGQPVLVPGDMGRYSYVLAGTEKAMEVSFGSSCHGAGRKMSRHQAKKVARERNLV
KELAERGILVRAATRATVDEEMPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgttctttgagaagatcgccccctacacctaccgcatcccccggcaggggaagatgcgg
gtggacgctgttttcttcgcctcaaaggagatcctaaaggacctcgaggcggaaaactac
gcctccttgcagcagctcatgaacgtggccaccctcccgggcatcgtggagcccgccctg
gccatgcccgacatccactggggctacggcttccccatcgggggggtggcggcctttgac
ccggaggaaggaggcgtggtaagccctggcggagtcggttttgacatcaactgtggggtc
cgcctcctcgcctcccacctcaccctagaagacctccttccccgccagaaggagctcgcc
gacgctctctaccgccttgtcccctcgggggtgggaagcgaaagaagggacgtgcgcttt
agcaaaagggagctcaaggagatcctcaaggagggggcgggctggctcgtgaagcggggg
tacggctaccccgaggacgtgcgcttcattgagtccgagggccgcctcccctgggccaac
cccgacaaggtgtcagaaagggcctttgagcggggggcgccccagatcggcaccttagga
agcgggaaccacttcctcgaggtgcagtacgtggacgaggtctacgacgaggaggcggcc
ctagccttcggcctcttcaagggacaggtcaccgtcctcatccacacgggaagccggggc
ctcggccaccaggtctgccaggactacgtggagcgcttcctcaaagccgccccccggtac
ggcattgagctcgtggacaagcagctcgccgccgcccccataaagagccccgagggccag
gactacctccaggccatggccgccgccgccaacttcgccttcgccaaccgccagctcatc
gcccacttcgtgcgggaggcctttgagaaggtgggctttacccccagggaccacgggctc
agggtcctctacgacctcgcccacaacaacgccaagcttgaagagcacgggggcaggcgg
gtcctcgtccaccgcaagggggccacgcgggccttcggccccggccacccggaggtcccc
gaggcgtaccgccgggtggggcagccggtcctggtgcccggggacatgggccgctactcc
tacgtcctcgcagggacggagaaagccatggaggtttccttcgggagcagctgccacggg
gccgggcgcaagatgagccgccaccaggccaaaaaggtggcccgggagcggaacctggtg
aaggagctcgcggaaaggggcatcctggtgcgggccgccacccgggccacggtggacgag
gagatgcccgaggcctacaaggacgtctccttggtggtggaggcggtggagggggcgggg
atcgggaaaaaggtggcccgcctcaggcccctcatcgtggtcaaggggtaa
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