Thioalkalivibrio paradoxus: THITH_01440
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Entry
THITH_01440 CDS
T03590
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tti
Thioalkalivibrio paradoxus
Pathway
tti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THITH_01440 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tti03021
]
THITH_01440 (rho)
03019 Messenger RNA biogenesis [BR:
tti03019
]
THITH_01440 (rho)
Transcription machinery [BR:
tti03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
THITH_01440 (rho)
Messenger RNA biogenesis [BR:
tti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
THITH_01440 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA
Phostensin_N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHE97161
UniProt:
W0DFP6
LinkDB
All DBs
Position
304422..305681
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKTAAELVAFAESQGIDNMSRARKQEIIFALLKAHAKTGEPIFGDGVLEILSD
GFGFLRGADSSYLAGPDDVYVSPSQIRRFGLRTGDTISGKIRPPKDNERYFALLKVSKIN
FEPPENARHKVLFENLTPLHPNQRMRMERGNGSTEDITARVIDMVAPFGKGQRGLIVSPP
KAGKTLMLQNIAQSIATNYPDSYLIVLLIDERPEEVTEMTRMVQGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNIEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNMEIHLDRRIAEKRVYPAINV
NRSGTRREELLTEPDELQKLWILRKFLHGMDDLEAMEFLLGRMQSSKTNADFFDMMRRA
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgaccgaactgaagcagaaaactgctgccgagctcgtggcgtttgccgagtcc
cagggcatcgacaacatgtcgcgggcacgaaaacaggagatcatctttgcgctgctgaag
gcccacgccaagaccggcgagccgatcttcggcgacggtgtattggagatcctgtccgac
ggcttcggattcctgcgcggcgcggacagctcgtaccttgcgggcccggatgacgtctac
gtctcgcccagccagatccggcgcttcggtctgcgcaccggcgataccatttcgggcaag
attcgcccaccgaaggacaatgaacgctatttcgcgctgctgaaggtctcgaagatcaat
ttcgagccgccggagaacgcgcggcacaaggtgctgttcgagaacctgacgccgctgcac
ccgaaccagcgcatgcgcatggagcgtggcaacggctccaccgaggacatcaccgcgcgc
gtgatcgacatggtcgcgccgttcgggaagggccagcgcggactgatcgtgtcgccgccg
aaggccggcaagacgctgatgctgcagaacatcgcgcaaagcatcgcgaccaactacccg
gacagttacctgatcgtgctgctgatcgacgagcggcccgaggaggtcaccgaaatgacc
cggatggtgcagggcgaggtggtgtccagcaccttcgacgaaccggccacccggcacgtg
caggtcgccgaaatggtgatcgagaaggccaagcgcctggtcgaacacaagcgcgacgtg
gtgatcctgctggattcgatcacgcgcttggcgcgcgcctacaacaccgtggtgccgagt
tcgggcaaggtgctcaccggcggcgtcgacgcgaacgcgctgcaccggcccaagcgcttc
ttcggcgccgcgcgcaacatcgaggaaggcggcagcctgaccattctcgccaccgcgctg
gtcgacaccgggtccaagatggacgaggtgatctacgaggagttcaagggcaccggcaac
atggagatccatctggatcgccgtatcgccgaaaaacgtgtgtacccggcgatcaacgtg
aaccgctccggcacccggcgcgaagaactgctgaccgagcccgacgagctgcagaagctc
tggatcctgcgcaagttcctgcacggcatggacgatctcgaggcgatggaattcctgctt
gggcgcatgcagtccagcaagaccaatgccgatttcttcgacatgatgcgccgcgcctga
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