Thioalkalivibrio paradoxus: THITH_03530
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Entry
THITH_03530 CDS
T03590
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tti
Thioalkalivibrio paradoxus
Pathway
tti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THITH_03530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tti03019
]
THITH_03530
03016 Transfer RNA biogenesis [BR:
tti03016
]
THITH_03530
Enzymes [BR:
tti01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
THITH_03530
Messenger RNA biogenesis [BR:
tti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
THITH_03530
Transfer RNA biogenesis [BR:
tti03016
]
Prokaryotic type
tRNA degradation factors
THITH_03530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
Motif
Other DBs
NCBI-ProteinID:
AHE97488
UniProt:
W0DKF2
LinkDB
All DBs
Position
740996..743851
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AA seq
951 aa
AA seq
DB search
MPRKRSQQPQVDPYFEREAQKYDNPIASRELILELLVDAGNPLGFDEIAERLEIGGDDQT
EALRRRLRAMERDGQVLCNRRGAYLPVSQADLIRGRVIGHPDGFGFLVPDDQTGDLFLSP
RQMRGVLHGDRVLGRVMGVDHRGRREGGIIEILERGSEQIVGRIRVEDGVGVVTPDNKRI
THDILIPPDGLGEAGDDQIVVVRIRPQASRKARLRGEVIEVLGEHMAPGMEIDIAIRAHG
LPFQWPDEVTAAADRLGAQVPAAAKRGRLDLRKKPLVTIDGEDARDFDDALYCEETETGW
RLWVAIADVSHYVEKDSALDQEARTRGTSVYFPNQVIPMLPEVLSNGLCSLNPDVDRLCM
LCEMEIGKRGAIRGFRFHEGVMRSHARLTYTQVAAMLVDGDEALREQYAAVVPHLERLYA
VFRALNGARNRRGAIDFDSTETRIEFGPERKIERIVPVERTDAHRLVEECMIAANVSAAK
FLKKYKIPALYRLHDRPPPEKIDALRDFLSGVGLTLEGGDEPTPVHYAAVLRAAAGRPDW
QLIQTVLLRSLSQANYGPSLSGHFGLALADYAHFTSPIRRYPDLLVHRGIRHVLRDGKAR
GFAYSHSDMEHLGEHCSMAERRADDATRDAVAWLKAEYMQDKVGDVFDGVVSGVTGFGLF
VEIVDVFIDGLVHVTSLDNDYYHFDPIRHRLTGERSGRTFRIGDRLRVQVIRVSLDDRKI
DLRLIDEERPARPGKRRQAGAAQPPAGETTPEAPAAEQTPPRRRGRRRGAGTAGPSAEAS
TRAEGDRRADADTAQTQAGAEGAPAKPARRKRTAAADPASGSPRDPAEEKTAAPARKRPS
DRRGRSGERKGRPETPRPAPEEAGASADSAPDSDGERSSGLPRPRRRRRSQQAAGEVALL
IQPSRKTGDQTDDGATDPANGDAGDAAEAEAGGKSARPARRSSRRRPRDDS
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgccgagaaaacgcagtcagcagccgcaggtcgatccgtatttcgagcgcgaggcgcag
aaatacgacaatccgatcgcgagtcgcgaattgattctggaattgctggtcgacgccggc
aatccgctgggtttcgacgagatcgccgagcgtctggagatcggcggcgacgaccagacc
gaggcgctgcgccgccgtctgcgtgcgatggagcgcgatggccaggtgctctgcaaccgc
cgcggcgcctatctgccggtgagccaggccgacctgatccgcggccgggtgatcggtcat
ccggatggtttcggcttcctggtgcccgacgaccagaccggcgacctgttcctgtcgccg
cggcaaatgcgcggtgtcttgcacggggaccgcgtgctcggccgggtgatgggcgtcgat
caccgggggcgtcgcgagggtggaatcatcgaaatcctcgaacgcggatcggaacagatc
gtcgggcgcatccgggtcgaggacggcgtcggtgtggtcacgcccgacaacaagcgcatc
acccacgacattctgattccgccggacgggctcggcgaagccggcgacgatcagatcgtg
gtggttcggatccggccgcaggcgtcgcgcaaggcccgcctgcgcggcgaggtgatcgag
gtgttgggcgagcacatggcgcccggcatggagatcgacatcgcgatccgcgcgcacggc
ctgccgttccagtggcccgacgaggtgaccgcggctgccgaccgtctgggcgcgcaggtt
ccggcggcggccaagcgcgggcggctggatctgcgcaagaagccgctggtcaccatcgac
ggcgaggacgcgcgcgacttcgacgacgcgctgtactgtgaggagacggaaaccgggtgg
cgcctgtgggtggcgattgcagacgtctcccattacgtggaaaaggactcggcgctggac
caggaggcgcgtacccggggcacttcggtgtacttcccgaaccaggtgatcccgatgctg
cccgaggtgctgtccaacggcctgtgctcgctgaacccggatgtcgaccggctgtgcatg
ctctgcgagatggagatcggcaagcgtggcgccattcgcggcttccgattccacgagggc
gtgatgcgctcgcatgcgcggctgacctacacccaggtcgcggcgatgctggtcgacggc
gacgaggcgttgcgggaacagtatgcggccgtggttccacacctcgagcggctgtacgcg
gtgttccgtgcgctgaacggcgcacgcaaccggcgcggcgcgatcgacttcgattccacc
gagacgcgcatcgagttcgggcccgagcgcaagatcgagcgcatcgtgccggtcgagcgc
accgatgcccaccgtctggtcgaggaatgcatgatcgcggcgaacgtgtcggccgcgaag
tttctgaaaaagtacaagattccggccttgtaccggctgcacgaccggccccctccggag
aagatcgacgccctgcgcgacttcctgtccggagtcgggctgaccctggagggcggcgac
gagccgacgccggtgcattacgcggcggtgcttcgtgccgctgccggccggccggactgg
cagctgatccagaccgtgctgctgcgttcgctcagccaggcgaactacggccccagcctg
agcggccacttcggtctggcgctggccgactatgcccacttcacgtcgccgatccggcgg
taccccgatctgctggtgcatcgcggcattcgccatgtgctgcgcgatggcaaggccagg
ggcttcgcgtattcgcattcggacatggagcacctgggcgagcattgctcgatggccgag
cgccgcgccgacgacgcgacccgcgacgcggttgcgtggctgaaggccgaatacatgcag
gacaaggtgggcgacgttttcgacggcgtggtttccggggtcaccgggttcgggctgttc
gtcgagatcgtcgacgtcttcatcgatggtctcgtgcacgtgaccagcctcgacaacgat
tactaccacttcgatccgatccgccaccggctgaccggcgagcgcagcggccgcacgttc
cggatcggcgaccggctgcgggtgcaagtgatccgcgtgagcctcgacgaccgcaagatc
gacctgcgtctgatcgacgaggagcgcccggcgcgtcccgggaagcggcggcaagccggc
gctgcgcagccaccagcgggcgagaccacgcccgaggccccggcggcggagcagacaccg
ccgcgccgccgggggcgccgccgtggcgcaggtacggctgggccgtccgcggaggcctcg
acgcgcgcagaaggcgatcgacgcgccgacgccgacacggcgcagacgcaggccggggcc
gaaggggcgcccgcgaagcccgcgcgcaggaagcgcaccgctgcggcggatcctgcgtcg
ggtagcccccgagacccggcggaagaaaaaactgccgcgccggcgcgaaagcgcccgagc
gatcggcgcggccgctcgggcgagcgcaagggccgtccggaaacgccgcggcctgcgccg
gaggaggccggggcgtcggcggacagcgcgcccgacagcgatggcgaacgcagcagcggg
ctgccgcgcccgcgccggcgccgccgcagccagcaggctgcgggtgaggtcgcgttgttg
atccagccttcccgcaagaccggcgaccagaccgacgacggcgccacggatccggccaac
ggagacgcgggcgatgccgccgaggccgaggccgggggcaagtcagcccggcccgcccgg
cggagttcgagacgcaggccgcgggacgactcgtga
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