Thioalkalivibrio paradoxus: THITH_03775
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Entry
THITH_03775 CDS
T03590
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tti
Thioalkalivibrio paradoxus
Pathway
tti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THITH_03775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tti03019
]
THITH_03775
03400 DNA repair and recombination proteins [BR:
tti03400
]
THITH_03775
Enzymes [BR:
tti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THITH_03775
Messenger RNA biogenesis [BR:
tti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THITH_03775
DNA repair and recombination proteins [BR:
tti03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
THITH_03775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
RecQ_Zn_bind
DEAD
HRDC
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AHE97528
UniProt:
W0DKJ5
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All DBs
Position
795058..796941
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AA seq
627 aa
AA seq
DB search
MSPTAQAGHAAQPSAEARRVPDPERILSEVFGYSGFRGRQREIIDCVAGGADALVLMPTG
GGKSLCYQIPALMREGCGVVISPLIALMQDQVAALRQSGVRAAALNSAEPIARIQEAERA
LLDGRLDLLYIAPERLMLPRTLELLARARVALFAIDEAHCVSQWGHDFRPEYIQLSLLAE
RFPGVPRLALTATADAPTRREIVTRLGLERARQFVSRFDRPNIRYRIAQSDAGGGSARDR
LLRFIRQEHPGEAGIVYCLSRKRVEAIAQWLADQGLEALPYHAGLSAAERDRNQKRFLTG
DGVIMVATIAFGMGIDKPNVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMLYGLQDV
ITLRQMLDQSTADDGHKRVERQKLEAMLGLCELTSCRRQALLAYFGDDLESPCGNCDTCL
EPPATWDATEPARKALSCVYRTGERFGVNYLIDVLRGRETDRLRALGHHHLSTFGIGTEL
EPAEWRVLFRQLIARGLLRVDVDGHGGLSLDESCRPLLRGEAAVELRREQRPARSRRERG
SRAARPAADLAPEDQALWEALRACRRRLADAQGVPPYVIFHDATLAEMLHQAPVTLDQMA
GISGVGISKLDRYGDEFLRVIRGHLGL
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
gtgagccccacggcccaggccggccacgctgcgcagccctccgcagaggcgcgccgggtt
ccggatcccgagcggatcctgtccgaggtgttcggctattccggcttccgcggccggcag
cgcgagatcatcgactgcgtcgccgggggcgcggatgcgctggtcctgatgccgaccggc
ggcggcaagtcgctctgctaccagatcccggcgctgatgcgggagggctgcggggtggtg
atctcgccgctgattgcgctgatgcaggaccaggtggctgcgctgaggcaaagcggggtc
cgcgcggcggcgctgaattccgcggaaccgatcgcgcgcatccaggaggcggaacgggcg
ctgctcgacggccggctcgacctgctgtatatcgctccggagcgcctgatgctgccgcgt
actctggagctgttggcgcgtgcgcgggtggcgctgttcgcgatcgacgaggcccactgc
gtgtcgcagtggggccacgacttccgccccgaatacatccagctctcgttgctggcggag
cgctttccgggagtgccgcgcctggcgctgaccgccaccgccgatgccccgacccggcgg
gagatcgtcacccgcctggggctggaacgggcccggcagttcgtcagccgtttcgaccgg
cccaatattcgctatcgcatcgcgcagtcggacgccggcggcggcagcgcccgcgatcgg
ctgttgcgcttcattcgccaggaacatccgggtgaggccgggatcgtgtattgcctgagc
cgcaagcgcgtcgaggcgattgcgcagtggctcgcggatcaggggctggaggcgctgccg
tatcacgccggactgagcgccgccgaacgcgaccgcaaccagaagcggtttctgaccggc
gacggggtgatcatggtcgccaccatcgcgttcggcatgggaatcgacaagcccaatgtc
cggttcgtggcgcacctgaacctgcccaagagcatcgaggcgtattaccaggagaccggg
cgcgccggacgcgacggcctgccggcggacgcctggatgctgtacggcctgcaggatgtg
atcaccctgcgccagatgctggaccaatccaccgcggacgacggccacaagcgcgtcgaa
cggcagaagctcgaggcgatgctggggctttgtgaactcaccagttgccggcgtcaggcg
ctgctcgcgtacttcggcgacgacctcgagtcgccctgcgggaactgcgacacctgcctg
gaaccgcccgcgacctgggatgccaccgaacccgcgcgcaaggcgctgtcctgcgtctat
cgcactggcgagcgcttcggagtgaactacctgatcgacgtgctgcggggccgcgagacc
gaccgtctgcgagcattgggccatcatcacctgagtaccttcgggatcggcaccgaactc
gagcctgccgagtggcgcgtgctgttccggcaactgatcgcacgcggcctgttgcgggtg
gatgtcgatggccacggcggtctcagcctggacgaatcctgccgcccgctgttgcgcggc
gaggccgcggtggaactgcgccgcgaacagcgtccggcgaggtcgcggcgcgaacgcggc
agccgggcggccaggcctgccgccgacctggcgcccgaggaccaggccctgtgggaggcg
ttgcgcgcctgccgacggcggctcgcggacgcccagggcgtgccgccctacgtgatcttt
cacgacgcgacgctggccgagatgctgcaccaggctccggtcacgctcgaccagatggcg
gggatatcgggtgttggcatcagcaagctcgatcgctatggcgacgagttcctgagggtc
attcgggggcatttggggctatag
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