Thioalkalivibrio paradoxus: THITH_07845
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Entry
THITH_07845 CDS
T03590
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tti
Thioalkalivibrio paradoxus
Pathway
tti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THITH_07845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tti03019
]
THITH_07845
03009 Ribosome biogenesis [BR:
tti03009
]
THITH_07845
Enzymes [BR:
tti01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
THITH_07845
Messenger RNA biogenesis [BR:
tti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
THITH_07845
Ribosome biogenesis [BR:
tti03009
]
Prokaryotic type
rRNA processing factors
THITH_07845
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
AHE98187
UniProt:
W0DLT2
LinkDB
All DBs
Position
complement(1639695..1642757)
Genome browser
AA seq
1020 aa
AA seq
DB search
MKRILINATQPEELRVAMVDGQRLYDLDIELPSRERKKANIYKARITRVEPSLEAAFVNF
GAERHGFLPFKEIARSAVGAPEDSDKPIREHLKEGLELLVQVEKEERGTKGAALTTYVSL
AGRYLVLMPNNPRAGGVSRRIEGEDRAELREALAELNIPEGMGVIARTAGVGRTAEELQW
DLDYMTALWSAILQASTEADAPALIHQESNVIIRALRDHMRNDVGEVIIDDDLVYRQALE
FVERVMPNSLRKIKLYSDPVPLFNRYQVESQIESAFERMVALPSGGALVIDHTEALISID
VNSARATKGGDIEETALNTNLEAAEETARQLRIRDLGGLIVIDFIDMGSNKHQREVETRL
RKALEMDRARVQVGRISRFGLLEMSRQRLRSSLGESSHITCPRCQGHGQIRSVESLALSI
LRLIEEEAMKDRTSLVLAKVPVDVGTFLLNEKRESLADIEDRHDVDVSILPAPQLLTPHF
EVRRVRDDGRDEDLADKSTFEMLDDDTGDETLLEHDRRARPERPLVQGVALPKPVPSSAP
AAAAREGLRSPPPPVAQPGFFARIWSSLFPGHRNGGEPEPAGSAETTERKDSATRQGGGR
RHADSTDGSDKPRSRRSSRGRKDRTPAAEETPTLAGKPSGPGTTAADTRSERKQEPSKAA
SDDAGARPAESATADDERGDAARSTRSRRSRRGGRRRNKGRSNGTPGESESAGDTAAEPP
ASGGHAQASESTEGSGTAPATTSGAGERSSKPDAPMAEPVSRDATDTDATASEPSPTAAE
IRQREARAALARMAASIPPETADAPAAPRGPHADAAGPDEAGSSAQAQAGPSDSGRESAP
VAAPPTPAAQDRTLPVATATAPESERKRAPERSNDGSAAGAEAKPSEPPTAASESAAAQP
ETPAEATPAAADPAPAEATTSTEEAPPEAAKPKRARRPRKPRAASKGTDAAAETPQRDGS
GTETPGSEASVDTGEKTPGPRKRRSRTKPAEPASATPDGDHAADSQPAEAVEPKPAANDR
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggattctcatcaacgctacgcagccggaagagctgcgtgtggcgatggtcgac
ggccagcgcctctacgaccttgatatcgaactgccctcgcgcgaacgcaagaaggccaat
atctacaaagcccggatcacccgggtcgaaccgagtctcgaagccgcgttcgtcaacttc
ggcgccgaacgccacggctttctgccgttcaaggaaatcgcacgctcggcggtcggtgcc
cccgaggattcggacaaaccgatccgcgagcatctgaaagaagggctggagctgctggtt
caggtcgaaaaggaggaacgcggcacgaagggtgccgcgctgacgacctacgtcagcctt
gccggccgctacctggtgctgatgccgaacaatccccgcgcgggcggcgtttcgcggcgc
atcgagggagaagaccgcgccgagttgcgcgaggcgttggccgaactcaacatccccgag
ggtatgggcgtgatcgcccgcaccgccggcgtcggccggactgccgaggagctgcagtgg
gacctcgattacatgacggccctgtggtcggccattctgcaggcttcgaccgaggccgat
gcaccggccctgatccatcaggaaagcaacgtgatcatccgggcgctgcgcgaccacatg
cgcaacgacgtcggcgaagtcatcatcgatgacgacttggtctaccgccaggcgctcgag
ttcgtcgagcgggtgatgcccaacagtctgcgcaagatcaagctgtattcggacccggtg
ccgctgttcaaccggtaccaggtcgagagtcagatcgagagcgcattcgagcgcatggtc
gcactgccctccggcggcgcgctggtaatcgaccacaccgaggcgctgatctcgatcgac
gtaaactcggcgcgtgccacgaagggcggtgacatcgaagagactgcgctgaacacgaat
ctggaggcggccgaagaaacggcccggcagctgcggatccgtgatctcggcgggctgatc
gtgatcgatttcatcgacatgggttcgaacaagcaccagcgcgaggtcgaaacccggctg
cgcaaggcgctggagatggatcgggcccgcgttcaggtggggcgcatcagccgcttcgga
ctgctcgagatgtcgcggcaacggctgcgttcctctcttggtgaatccagccacatcacc
tgcccgcgctgccaaggccatggccagatccgcagcgtcgaatcgctggcgctgtcgatc
ctgcgcctgatcgaggaagaggcgatgaaggatcgcaccagcctcgtgcttgcgaaggta
ccggtggatgtcggcaccttcctcctgaacgagaagcgtgaatccctcgccgacatcgag
gatcgccacgacgtcgacgtgagcattctcccggctccacaactgctgaccccccatttc
gaggtgcgcagggttcgggatgacggacgcgacgaggatctcgccgacaagagcacgttc
gagatgctcgacgatgataccggcgacgaaaccctgctggaacacgaccgccgcgcccgg
cccgagcgccctctggttcagggggtcgcgctgcctaaacccgtgccatccagcgcacct
gccgccgccgcgcgcgaaggcctgcgctcgccgccgcccccggtcgcccagcccggattc
ttcgctcgtatctggagttcgctgttccccggccaccggaacgggggcgaaccggaacca
gccggatccgcggaaaccaccgagcggaaggactcggcgacgcggcaaggcgggggtcgc
cggcacgccgattccaccgacggctcggacaagccgcgcagccggcgctccagccgcggc
cgcaaggatcgcacgccggccgcagaagaaacgccgacgctggccgggaagccgtccggc
cccggcaccacggcggcggacacccgcagcgagcgtaagcaggaaccctccaaggcggcg
tccgacgatgccggcgcccggcctgccgaatccgcaaccgccgacgacgagcgtggggat
gccgcgcgcagcacccgcagccgccgctcacgccggggcggacgccgccgcaacaagggg
cgcagcaacggcaccccgggcgagagcgaaagcgccggggacaccgccgcagaaccgcca
gcgtccggcggacatgcgcaagcatcggaaagcacagagggatcgggaaccgcgcccgcc
acgaccagcggcgctggcgagcgcagctcgaaacccgacgcgcccatggctgaacccgta
agccgggacgccaccgacacggacgcgacggcatccgaaccgtcgccgacggccgccgag
atccgccagcgtgaagcgcgggccgcgctcgcgcgcatggccgcctcgatcccaccggaa
accgctgacgctcccgcagccccgcgcgggccgcacgcggacgctgccgggccggacgag
gccgggtcttctgctcaggcgcaagccggtccctccgattccggccgcgaatcggcaccc
gtggcggctccgccgacacccgccgctcaagaccggacccttcccgtggctacggctact
gcccccgagagcgagcgcaagcgagcgccggaacgcagcaacgatggcagcgctgccggc
gccgaggccaagcccagcgaaccaccgaccgccgcttccgaatctgcggcagcccagccg
gaaacgccggcggaggcaactcccgccgcagcagacccggctcctgccgaggccacgacc
agcaccgaggaagccccgccggaggcggccaagcccaagcgcgcccgccggccccgcaag
ccacgcgccgcaagcaagggcaccgacgcggcagccgaaaccccgcaacgtgacgggtcc
ggcaccgagacgcccgggagcgaggcgagtgtcgacactggcgaaaagacgcccggaccg
cggaagcgccggtcccgcacaaaacccgcggaaccagcctcggccaccccggatggggac
cacgcggccgattcgcagccggcggaggcggtcgaacccaagccggccgcgaacgaccgc
taa
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