KEGG   Thioalkalivibrio paradoxus: THITH_09355
Entry
THITH_09355       CDS       T03590                                 
Name
(GenBank) CRISPR-associated protein Csm1
  KO
K07016  CRISPR-associated protein Csm1
Organism
tti  Thioalkalivibrio paradoxus
Brite
KEGG Orthology (KO) [BR:tti00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:tti02048]
    THITH_09355
Prokaryotic defense system [BR:tti02048]
 CRISPR-Cas system
  Type III CRISPR-Cas system
   Type III signiture cas proteins
    THITH_09355
SSDB
Motif
Pfam: Cas10-Cmr2_palm2 Csm1_B HD Cas3_HD HTH_HVO_0163_N
Other DBs
NCBI-ProteinID: AHE98436
UniProt: W0DJ11
LinkDB
Position
complement(1985736..1988432)
AA seq 898 aa
MDEPVAQHPLLDASCRVALAAYLHDLGKFAERARLEVPPDRLDTHLTQYCPYHEAGGRGW
HSHRHAAYTALAWDLIERRFPELVGRDIAPFAAWNAPDVDDSIVNAASRHHKPETYLQWL
VATADRVASGFEREAFDEYNRSKDQTREGRNHFTARQLTLFEQVAAGTDRGRVRRQDLHY
RYPLQPLSVQAIFPVAAAGYETADNTVAQREYARLWDAFRGALDAIPSSHRGNWPLWLDH
FDSAWACYTQAIPSATAFGTRPDVSLYDHSRTTAALATALWRYHHDRDDDRAQVRARLAD
WHRPDWDEPKLLLIQGDLFGIQEFIFASGGETQKRAARLLRGRSFYVSLLTECAALRILD
TLGLPPTSQVINAAGKFLIVAPNTDETVAALQRVQRELDAWFLEHCFGESGIGLAWLPAC
CNDFLRRKDAAEAPFQRLIKRLFEALQQAKARRFDLCAAGAPAPLFEGFLDRFDPALGVC
EIDGRAPATRRENGVAVSRLAADQIAVGRHLAGKQRLLITRDSLDHNTLELPVFGYAVQF
TGGDDQTGRFGMAARNGNLRRAWDFSLPDREDTPLFSGYARRFINGYVPRFGSQNEWEQG
RYQRLPAELREGLEPQAPKTLEHLACDDREPDAAGNYRGIEALVTLKGDVDNLGAIFETG
LEPPTFAKMAALSRQMNAFFAIWLPWHCQQKRTSAYTVFAGGDDFFLIGPWRSTMQLARE
MRREFARYVAGNPGIHFSAGLAMTKPGLPIRQMGALADEALDQAKARQNEAGEYVKDALT
CFGYTVSWEDWETLWGLHDELAAASGEIALSTSYLYGLHGLADMAGRLQRGEGRIEDALW
NSRFVYRTRRMLEHHRGMSPAARNLWQQRLGTLLGGGIQRFGSTFKLALFPYLYQHRY
NT seq 2697 nt   +upstreamnt  +downstreamnt
atggacgagcccgtagcgcagcatccgttgctggacgcatcctgccgggtggcgttggcc
gcctacctgcacgacctgggaaagttcgccgaacgcgcgcggctggaagtgccgccggac
cggctcgatacccacctcacgcagtattgcccctaccacgaggccggcggtcgcggctgg
cacagccaccgccatgccgcctacacggcgttggcctgggacttgatcgaacgccgtttc
cccgagctcgtgggccgcgacatcgcaccctttgcggcgtggaacgccccggatgtcgac
gactcgatcgtgaatgccgcaagccggcatcacaagcccgaaacctacctgcaatggctc
gtggccaccgccgaccgggtcgcttccggtttcgagcgtgaggccttcgacgagtacaac
cggtcgaaggaccagacgcgcgagggccgcaaccacttcaccgcccgccagctcacgctg
ttcgaacaggttgcggccggcaccgaccggggcagggtgcggcggcaggatctgcattac
cgctacccgttgcagccgctctccgtgcaggccatcttcccggtggctgcggcgggctac
gaaaccgcagacaacaccgtcgctcagcgggagtatgcacggctgtgggatgcgttccgc
ggcgcgctggacgcgatcccgtccagccaccgcggtaactggccgctgtggctggatcac
ttcgactccgcctgggcctgctacacgcaggcgatcccgtcggcaaccgcgttcggcacc
cgcccggatgtctcgctatacgatcattcccgcaccaccgccgcgctggccaccgcgctc
tggcgctaccatcacgatcgcgacgacgatcgcgcgcaggttcgcgcacgcctggcggac
tggcatcgcccggactgggacgaaccgaaactgctgctgatccagggcgatctcttcggc
atccaggagttcatcttcgccagcggcggcgagacgcagaagcgtgcggcaaggctgctg
cgcggccgatcgttttacgtgtcgctgctcacggaatgcgcggcactgcgcatcctcgat
accctggggctgcctccgaccagccaggtgatcaacgcggccggcaagttcctgatcgtc
gccccgaataccgacgagaccgtggcggccctgcagcgcgtacaacgcgaactcgacgcc
tggttcctcgaacactgtttcggcgagtcggggatcgggctggcctggctccccgcctgc
tgcaacgatttcctgcgccgcaaggatgcggccgaggccccgttccagcgcctgatcaag
cgtttgttcgaagcgctgcaacaggccaaggcccggcgcttcgacctgtgcgcggcgggc
gcgccggcgccgctgttcgagggcttcctggatcgcttcgacccggcactcggggtctgc
gagatcgacgggcgcgcaccggcgacgcgccgggaaaacggggtcgctgtcagccgtctg
gctgcggaccagatcgcggtgggccgccatctggcagggaagcaacggctgctgatcacc
cgagattcgttggaccacaacacgctggaactgccggtgttcggctatgccgtgcagttt
accggtggcgacgaccagaccgggcgattcggcatggccgcgcgcaacggcaacctgcgc
cgcgcctgggatttcagcctcccggaccgcgaggatacaccgctgttctcgggctatgcc
cggcgctttatcaacgggtacgtgccgcggttcggcagccagaacgagtgggaacaggga
cgttaccagcgcctgccggcagaacttcgggaagggctggaaccgcaggctccgaagacc
ctggagcacctcgcctgcgacgaccgcgagccggacgccgccgggaattatcgcggcatc
gaggcgctggtcacgctgaagggcgatgtcgacaacctcggtgcgatcttcgaaacgggg
ctggagccgcccaccttcgcgaagatggccgcgctgtcgcggcagatgaatgcgttcttc
gcgatctggttgccctggcattgccagcagaagcggacttccgcctataccgtctttgcc
ggcggcgacgacttcttcctgatcggaccctggcgcagcaccatgcagctggcccgcgag
atgcgccgcgagtttgcccgctacgtcgccgggaatcccggcatccacttctccgccggc
ttggcgatgaccaagccgggtctgccgattcgccagatgggcgcgctggccgacgaggcg
ctggaccaggcgaaggcacggcagaacgaggccggagagtatgtgaaggacgcgctgacc
tgtttcggctacacggtgtcctgggaggactgggaaaccctgtgggggctgcacgacgaa
ctggcggctgcgagcggcgaaatcgcgctcagcacgagttacctctatggcttgcatggc
ctggccgacatggccgggcgcctgcaacgcggggaaggccgcatcgaagatgcgttgtgg
aactcgcgtttcgtctaccgaacacgccgcatgctcgaacatcaccgcgggatgtccccc
gccgcgcgcaatctctggcaacagcgtctgggcaccctgctcggcggtggcatccagcgc
tttggcagcacattcaaactggcgcttttcccctacctgtatcaacaccgttactga

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