Thioalkalivibrio paradoxus: THITH_12885
Help
Entry
THITH_12885 CDS
T03590
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tti
Thioalkalivibrio paradoxus
Pathway
tti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THITH_12885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tti03019
]
THITH_12885
03016 Transfer RNA biogenesis [BR:
tti03016
]
THITH_12885
Enzymes [BR:
tti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
THITH_12885
Messenger RNA biogenesis [BR:
tti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
THITH_12885
Transfer RNA biogenesis [BR:
tti03016
]
Prokaryotic type
tRNA degradation factors
THITH_12885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_2
KH_SLS1_2
KH-I_KHDC4-BBP
KH_KhpA-B
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AHE99001
UniProt:
W0DKL4
LinkDB
All DBs
Position
complement(2785327..2787411)
Genome browser
AA seq
694 aa
AA seq
DB search
MSYKKTFQYGNQTVTFETGGIARQATGAVLVNIADTVVLVTVVARKEADPGRDFFPLTVN
YQERTYAAGKIPGGFFKREGRPNEKETLTSRLIDRPLRPLFPEGFTHETQIVATVMSINP
EVDPDIVAMLGASAALAVSGVPFAGPIGAARVGYRDGQYLLNPTASELPDSQLDLVVAGT
ENAVIMVESEASELSEDVMLGAVMYGHEQMQAAIQAIRELAADAGKPAWDWTAPQTDDSV
DAQVAEVARNALVEAYQIAEKQARTERLNSLRADVVERLATGDEGAPSAEAVKNAFHELE
YRIVRDRILDGNPRIDGRDTRSVRPITVQTGVLPRAHGSAVFTRGETQALVVATLGTDRD
AQVIDAIEGERRERFMLHYNFPPYCTGETGMVGSPKRREIGHGRLAKRGVQAVVPRDDSF
PYVIRVVSEITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEADRFAVLTDI
LGDEDHLGDMDFKVAGTRAGVTALQMDIKIDGITREIMEKALQQAREGRLHILERMGESI
SSHRTEMSSYAPRFITLRINPEKIRDVIGKGGATIRALTEETGTSIDISDDGVVKIASTD
QAAGEEAKRRIEELTADVEVGRVYSGRVVKIMDFGAFVSILPGRDGLVHISQISNERVEN
VTDFLNEGDSVTVKVLEVDKQGRIRLSMKAVDAA
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgtcatacaagaagacgtttcagtacggaaatcagacggtcaccttcgagaccggaggc
atcgcccggcaggccaccggggctgtcctggtcaacatcgcggataccgtggtgctggtc
acggtggtggcgcgcaaggaggccgatcccgggcgcgacttcttcccgctgacggtgaac
taccaggaacggacctacgcggcaggcaagatccccggggggttcttcaagcgcgaggga
cgcccgaacgaaaaggaaacgctgaccagccggctgatcgaccgtccgttgcgcccgctg
ttccccgagggcttcacgcacgaaacccagatcgttgcgaccgtgatgtcgatcaacccc
gaggtggacccggacatcgtcgcgatgctcggcgcctcggccgcgctcgcggtgtcgggc
gtgccgttcgccgggccgatcggcgcggcgcgcgtcggctaccgcgacggtcagtacctg
ctgaaccccacggcctccgagttgccggactcgcagctcgatctggtcgtcgcgggtacc
gagaacgcggtgatcatggtcgaatcggaggccagcgagctttccgaggacgtgatgctg
ggcgcggtgatgtacggccacgaacagatgcaggctgcgatccaggcgatccgcgaactg
gccgccgacgccggcaaaccggcctgggactggaccgcgccgcagaccgatgacagcgtc
gatgcccaggtggccgaagtggcccgcaacgcgctggtcgaggcctaccagatcgccgag
aaacaggcgcggaccgagcgcttgaacagcctgcgtgcggatgtggtcgaacggctcgcc
accggtgacgagggcgccccttccgccgaagccgtgaagaacgcgttccacgaactggag
taccggatcgtgcgcgaccgcatcctcgatggcaacccgcgcatcgatggccgggatacg
cgttcggtgcgtccgatcacggtgcagaccggggtgttgccgcgcgcccacggttcagcg
gtgttcacccgcggcgagacccaggcgctggtggttgcaaccctcggtaccgaccgcgat
gcccaggtgatcgatgcgatcgagggcgaacgccgcgaacggttcatgctccattacaac
ttcccgccgtactgcaccggcgaaaccggtatggtgggctcgccgaaacggcgcgagatc
ggccacggccgcctcgcgaagcgcggcgtgcaggcggtcgtgccgcgagacgacagcttc
ccctacgtgatccgcgtggtctccgagatcaccgaatcgaacggttcgagttcgatggcg
tcggtctgcggcaccagcctcgcgctgatggatgccggcgtaccgctgaaggcgccggtc
gccgggatcgcgatggggctgatcaaggaagcggaccgcttcgcggtgttgacggatatc
ctcggcgacgaggatcatctgggcgatatggacttcaaggtcgcaggtacgcgcgccggc
gtgacggcgctgcagatggacatcaagatcgacgggattacccgcgagatcatggagaag
gcgctgcagcaggcccgcgagggacgtctccatatcctcgagcgcatgggcgagtcgatc
agttcgcatcgcaccgagatgtcgagctatgcgccgcgcttcatcaccctgcggatcaac
ccggagaagatccgggatgtgatcggcaagggcggcgcgaccatccgggcgctgaccgag
gagacgggcacgtcgatcgatatctccgacgacggggtcgtgaagatcgcgtcgaccgac
caggccgcgggcgaggaggccaagcgccgcatcgaggaattgaccgccgatgtcgaagtc
ggtcgggtctacagcgggcgcgtggtgaagatcatggatttcggcgcgttcgtgtcgatc
ctgcccggccgcgacggactggtgcacatctcccagatctcgaacgagcgcgtggagaat
gtgaccgacttcctgaacgagggcgattcggtgaccgtgaaggtgctcgaggtcgacaag
cagggccggatcaggctcagcatgaaggccgtcgacgccgcctga
DBGET
integrated database retrieval system
