Thioalkalivibrio paradoxus: THITH_14320
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Entry
THITH_14320 CDS
T03590
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tti
Thioalkalivibrio paradoxus
Pathway
tti03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tti00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THITH_14320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tti03021
]
THITH_14320
03400 DNA repair and recombination proteins [BR:
tti03400
]
THITH_14320
Enzymes [BR:
tti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THITH_14320
Transcription machinery [BR:
tti03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
THITH_14320
DNA repair and recombination proteins [BR:
tti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
THITH_14320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
AHE99251
UniProt:
W0DLD4
LinkDB
All DBs
Position
complement(3097835..3102043)
Genome browser
AA seq
1402 aa
AA seq
DB search
MKDLLNLFKQQTQPEEFDAIRIGLASPDQIRTWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVVCEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLLLDMTLKDIEKVLYFESFIVVDPGFTTLERGQLLTDEEYLEAIEEHGDDFVALM
GAEAVLELLKNIDLQAEAVRLRTELSETGSETKIKRLGKRLKLVESFLDSGNKPEWMIMS
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKRMALELFKPFIFGKLQRRGLATTIKAAKKAVEKEGPEVWDILEEVIREHP
VLLNRAPTLHRLGIQGFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMMSSNNVLSPANGEPIIVPSQDIVLGLYYLSRERVNAKGEGMVFADVDEVHRAYESG
VVDLHARIQARIAEADEQGNPQPPIRRETTVGRAILSGILPQGLSFSLIDRELSKKAISR
LINACYRRLGLKDTVVFADQLMYLGFRFSTRAGVSFCANDMVIPEEKADILRLAEEQVKE
IEEQYSSGLVTKGERYNKVVDIWSHCNDQVAKAMMEHLGKEEVTTREGEHVAQSSFNSIF
MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGL
ADTALKTANSGYLTRRLVDVSQDVVVTEDDCGTEQGLLMKAIIEGGDVVEPLRDRVLGRT
TARDILKPGGNDVLVAAGELLDEARVEMLDENGVDEVWVRSAITCETRQGICAKCYGRDL
ARGHLVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAVTVSAIQVKNAGQIRLHNI
KTVVNKHGNLVAVSRSGELGVIDEAGRERERYKVPYGASISVKEGDAVEAGQEVAIWDPH
THPIITEVAGRVQLVDFVDNVTVTKETDEFTGLSSNVVMDHKSRSAAGRDLRPTVRLIDE
EGNDLFIAGTDMPAQYLLPAGAIFNLDDNARVEVGDVIARLPQESSKTRDITGGLPRVAD
LFEARKPKDAAVLAEISGTISFGKETKGKQRVVITPESGDPQEMLIPKYRNVNVFEGERV
ERGEVIVDGELDPHDILRLRGSTTLAEYHVQEIQDVYRLQGVKINDKHIEVILRQMIRKV
VITDPGDTRLLAGDQIDRARVVEENEKLEADQRPATYERVLLGITKASLVTESFISAASF
QETTRVLTEASTRGARDELRGLKENVIVGRLIPAGTGLAYHKERRRKRHLELPSFDLMGS
EAAESEVTTLPDNGGEPGASAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctcctcaatctgttcaagcaacagacccagccggaagaattcgatgcgatc
cgcatcggcctcgcctcgccggaccagatccggacctggtctttcggcgaggtgaaaaag
cccgagaccatcaattaccgcaccttcaagcccgagcgcgacggcctgttctgcgcgaag
atcttcgggccggtgaaggactacgagtgtctctgtggcaagtacaagcgtctgaagcac
cgcggcgtggtctgcgagaagtgcggcgtcgaggtgacgcagaccaaggtgcgccgcgag
cgcatgggccacatcgacctcgcgtcgccggtcgcgcacatctggttcctgaagagcctg
ccgtcgcgaatcggcctgctgctcgacatgacgctgaaggacatcgagaaggtgttgtac
ttcgagtcgttcatcgtcgtcgaccccggtttcaccacgctcgagcgcggccagctgctc
accgacgaggaatacctcgaggcgatcgaggagcacggcgacgacttcgtcgcgctgatg
ggtgccgaggcggtgctcgagctgctgaagaacatcgatctgcaggccgaggcggtgcgt
ttgcgcaccgaattgtcggagaccgggtccgaaaccaagatcaagcgcctcggcaagcgg
ctgaagctcgtcgagtcgttcctggattccggcaacaagccggaatggatgatcatgtcg
gtgctgccggtactgccgccggatctgcgtccgctggtgccgctcgacggcggccgcttc
gcgacctcggacctgaacgacctgtaccgccgggtgatcaaccgcaacaaccgcctgcgc
cggctgctggagctgaacgcgcccgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgacgcgctgctcgacaacggccgccgcggccgcgcgatcaccggcaccaac
aaacggccgctgaagtcgctggccgacatgatcaagggcaagcagggtcgtttccgccag
aacctgctcggcaagcgcgtcgactactcgggccgctcggtgatcgtggtcggtccgacg
ctgcgcctgcatcagtgcggactgcccaagcgcatggcgctggagctgttcaagccgttc
atcttcggcaagctgcaacgacgcggactggcgaccaccatcaaggccgcgaagaaggcg
gtcgaaaaggaaggtccggaggtctgggatatcctcgaagaggtgattcgcgagcatccg
gtgctgctgaaccgcgcgccgacgctgcatcgtctcggcatccagggcttcgagccggtg
ctgatcgagggcaaggcgatccagctgcatccgctggtctgtgcggcgttcaacgccgac
ttcgacggcgaccagatggcggtgcatgtgccgctgtcgctggaggcgcagctcgaggcg
cgcacgctgatgatgtcgtcgaacaacgtgctgtcgccggcgaatggcgagccgatcatc
gtgccgtcgcaggacatcgtgctcgggctgtattacctctcgcgcgagcgcgtgaacgcg
aagggtgagggcatggtgttcgcggacgtcgacgaagtgcaccgcgcctacgagagcgga
gtcgtcgatctgcatgcgcggatccaggcgcggatcgccgaggccgacgagcagggcaac
ccgcagccgccgatccgccgggagacgacggtggggcgggcgattctctcgggcattctg
ccgcaggggctgtcgttcagcctgatcgaccgcgagctgagcaagaaggcgatttcccgg
ctgatcaacgcctgctaccggcgtctgggcctgaaggacaccgtggtcttcgcggaccag
ctgatgtatctcgggttccggttctcgacccgcgccggcgtgtcgttctgcgccaacgac
atggtgatcccggaggagaaggccgacatcctgcgccttgccgaggagcaggtgaaggag
atcgaggagcagtactcgtcgggtttggtcaccaagggcgagcgctacaacaaggtcgtc
gacatctggtcgcactgcaacgatcaggtcgcaaaggcgatgatggagcatctcggcaag
gaagaagtgaccacgcgcgagggtgaacacgtggcgcagtcttcgttcaactcgatcttc
atgatggccgattccggcgcccgcggttcggctgcgcagatccggcagctggccggtatg
cgcggactgatggcgaaaccggacggttcgatcatcgagacgccgatcaccgcgaacttc
cgcgaaggtctgaacgtgctgcagtacttcatctcgacgcacggtgcccgcaagggtctg
gccgataccgcgctgaagaccgcgaactcgggctacctcacgcggcggctggtcgacgtg
tcgcaggacgtcgtcgtcaccgaggacgactgcggcaccgagcagggattgctgatgaag
gcgatcatcgagggtggcgatgtggtcgagccgctgcgcgaccgcgtgctcggccgtacc
acggcccgcgacatcctgaagccgggtggcaacgacgtgctggtcgcggccggcgaactg
ctcgacgaggcccgggtcgagatgctcgacgaaaacggtgtcgacgaggtctgggtccgt
tccgcgatcacctgcgagacgcggcagggtatctgcgccaagtgctacgggcgcgacctg
gcccgcgggcacctggtcaacatcggcgaatcggttggtgtgatcgcggcgcagtcgatc
ggcgaacccggcacgcagctgacgatgcgcaccttccacatcgggggcgccgcgagccgt
gcggtgaccgtcagcgcgatccaggtgaagaacgcgggccagatccgcctgcacaacatc
aagaccgtggtcaacaagcacggcaacttggtcgcggtctcgcgttcgggcgaactcggc
gtgatcgatgaggccgggcgcgagcgcgagcgctacaaggtgccctacggggcgagcatc
agcgtgaaggaaggcgacgcggtcgaggccggacaggaggtcgcgatctgggatcctcac
acccatccgatcatcaccgaggtggccggccgcgtccagctggtcgatttcgtcgacaac
gtcaccgtgaccaaggagaccgacgagttcaccgggctgtcgtcgaacgtggtgatggac
cacaagagccgtagcgccgccgggcgcgatctgcggccgaccgtgcggctgatcgacgag
gaagggaacgatctgttcatcgcgggcaccgacatgccggcgcagtacctgttgccggcc
ggtgcgatcttcaatctcgacgacaacgcccgtgtggaggtcggcgacgtgatcgcgcgc
ctgccgcaggagtcgtcgaagacccgcgacatcaccggtggtctcccgcgtgtcgcggat
ctgttcgaggcgcgcaaaccgaaggatgcggcggtgctcgccgagatctcgggcacgatc
tcgttcggcaaggaaaccaagggcaagcagcgcgtggtgatcacgccggaaagcggggat
ccgcaggagatgctgattccgaagtaccggaacgtgaacgtgttcgaaggcgagcgtgtc
gaacgcggcgaagtgatcgtcgacggcgagctcgacccgcacgacatcctgcgtctgcgc
ggctcgaccacgctggccgaataccacgtgcaggagatccaggacgtctatcggctgcag
ggcgtgaagatcaacgacaagcacatcgaggtgatcctgcgccagatgatccgtaaggtg
gtgatcaccgatcccggcgacactcggctgctcgcgggcgatcagatcgaccgggctcgc
gtggtcgaggagaacgagaaactggaggcggatcagcgcccggcgacctacgaacgcgtg
ctgctgggcatcaccaaggcgtcgctggtgaccgagtcgttcatctcggcggcttcgttc
caggagaccacccgggtgctcaccgaggcctcgacccgcggcgcgcgcgacgagcttcgc
ggcctgaaggaaaacgtgatcgtcgggcggctgatccccgcgggcaccgggcttgcctac
cacaaggagcgccggcgcaagcgccacctcgagctgccgagcttcgatctgatgggcagc
gaggcggcagagtcggaagtcaccactcttccggacaacggcggagaaccgggcgcgagc
gccgagtaa
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