Thioalkalivibrio paradoxus: THITH_14325
Help
Entry
THITH_14325 CDS
T03590
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tti
Thioalkalivibrio paradoxus
Pathway
tti03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tti00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THITH_14325 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tti03021
]
THITH_14325 (rpoB)
03400 DNA repair and recombination proteins [BR:
tti03400
]
THITH_14325 (rpoB)
Enzymes [BR:
tti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THITH_14325 (rpoB)
Transcription machinery [BR:
tti03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
THITH_14325 (rpoB)
DNA repair and recombination proteins [BR:
tti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
THITH_14325 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AHE99252
UniProt:
W0DPU4
LinkDB
All DBs
Position
complement(3102121..3106197)
Genome browser
AA seq
1358 aa
AA seq
DB search
MALSYTEKKRIRKDFGKRPQILDVPYLLETQLASYRDFLQDSLPAESREAKGLHAAFQSV
FPIVSYSGHVQLEYVSYRLGEPMFDVKECQIRGVTYAAPLRVMLRLVIHDKEAPAGSTVV
KEVKEQEVYMGELPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSQKLLFNA
RIIPYRGSWLDFEFDAKDMVFVRIDRRRKLPATVLLRALAMDTEQVLQTFFEFNTVQLQE
AGAALELIPERLRGENAVVDIRDGDRMIVEAGRRITPRHIREIEKAGIRTLNVPDDYLVG
RVLARNIVDTETGEVVADANEVITEGLLDKLRDEGVGQFEIIYTNDYDRGSFISDTLRLD
STRTQLEAQVEIYRVMRPGEPPTKDAAENLFGNLFFSEERYDLSAVGRMKFNRRVGRDTD
EGAGVLSPDDILDVLKVLIDLRNGIGTTDDIDHLGNRRIRSVGEMAENQFRLGLVRVERA
VKERLTVAESEGLMPQELINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNRYGFLETPYRKV
EGGQVTDEIVYLSAIEESQYVIAQANAAMDDQGRLTDDLVSCRYQNEFTISTPDKIQFMD
VSPKQIVSVAAALVPFLEHDDANRALMGSNMQRQAVPCLRAEKPLVGTGIERTVAIDSGS
SIVARRGGTVDSVDAARIVVRVNDDETAAGEPGVDIYNLTKYARSNQNTCINQRPLVSVG
DELARGDVLADGSSTDMGELALGQNMMVAFMPWNGYNFEDSILISERVVQEDRFTTIHIE
ELNCVARDTKLGQEEITADIPNVSESLLAKLDESGIVYVGAEVRPGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGIEGTVIDVRVFTRDGVEKDARARSIEESDLA
GVRKDLRDQQRIYEEDIYARVERLLLNKVAAGGPDGLVDGTKVTKKYLAGLSRNHWFEIR
LRDDEGNAQLEELGRQLEEQAEAFEKRFEHQKAKLAAGDDLPPGVQKMVKVYVAVKRRMQ
PGDKMAGRHGNKGVISMIVPEEDMPFLEDGTPVDIVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGQKIARMLEAQAELARLREFLAEIYARGERKVDLDTLSDTEILTLCRNLRGGVPMAT
PVFDGAHEDEIKAMLRLADLPETGQAVLYDGRTGDAFDRPVTVGYMHMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKADDVQGRNKM
YKNIVDGEHYMEANVPESFNVLMKEIRALGINIELEQD
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggccctcagttataccgaaaagaaacgcatccgcaaggattttggcaagcgcccccaa
atccttgatgttccctacctgctcgagacccagctcgcgtcgtatcgcgacttcctgcag
gacagcctcccggccgagagtcgcgaggcgaaggggctgcatgccgcgtttcagtcggta
ttcccgatcgtcagctattccggtcacgtgcagctggaatacgtgagctaccgcctcggg
gagccgatgttcgacgtcaaggaatgccagatccgcggcgtaacctatgccgcgccgctg
cgtgtgatgctgcggctggtgatccacgacaaggaggcgccggccggaagcacggtggtc
aaggaagtgaaggagcaggaggtctacatgggcgaactgcctctgatgaccgagaatggc
accttcgtgatcaacggcaccgagcgggtcatcgtgtcgcagttgcatcgctcgcccggc
gtgtttttcgaccacgacaagggcaagacccacagttcgcagaagctgctgttcaatgcc
cggatcatcccgtaccgggggtcgtggctggatttcgagttcgacgcgaaggacatggtg
ttcgtgcgtatcgaccggcgccgaaagctgcccgcgacggtgctgctgcgcgcgctggcg
atggacaccgagcaggtgctgcagaccttcttcgagttcaataccgttcagctgcaggaa
gcaggggcagcgctggaactgattccggaacgcctgcgtggcgagaacgcggtggtcgat
atccgcgacggcgatcgcatgatcgtcgaggcgggtcggcgcatcacgccgcggcacatt
cgcgagatcgagaaggccgggatccgcacgctgaacgtgcccgacgactatctggtcggg
cgtgtgctggcgcggaacatcgtcgacacggaaaccggcgaagtcgtcgccgatgccaac
gaggtgatcaccgagggtctgctggacaagctgcgtgacgaaggcgtcggccagttcgag
atcatctacaccaacgattacgaccgcggatcgttcatctccgacacgctgcggctggat
tccacccgtactcagctcgaggcccaggtggagatctaccgggtgatgcgcccgggcgaa
ccgccgaccaaggacgcggccgagaacctgttcggcaacctcttcttttccgaggagcgc
tacgacctgtccgcggtcggccggatgaaattcaatcgtcgggtgggccgcgacaccgac
gagggcgcgggcgtgctttcgcccgacgatatcctcgacgtgctgaaggtgctgatcgac
ctgcgcaacgggatcggcaccaccgacgacatcgaccatctcggcaatcgccgcatccgc
agcgtcggcgaaatggccgagaaccagttccggctcgggctggttcgggtcgagcgcgcg
gtgaaggagcgtctgaccgtcgccgagagcgaggggctgatgccgcaggagctgatcaac
gcgaagccggtggcggccgcggtcaaggagttcttcggctcctcgcagctgtcgcagttc
atggaccagaacaaccccttgtccgaggtgacgcacaagcgccggatctcggcgctgggc
cccggcggcctgacccgcgagcgggccggattcgaggtgcgcgacgtgcatccgacgcat
tacggccgcgtgtgcccgatcgagacgccggaaggtccgaacatcggtctgatcaattcg
ctggccgtgtacgcgcgcacgaaccgctacggcttcctcgaaaccccgtaccgcaaggtc
gagggcgggcaggtcaccgacgaaatcgtctacctgtcggcgatcgaggaaagccagtac
gtgatcgcgcaggcgaacgccgcgatggacgatcagggccgtctgaccgacgatctggtg
tcgtgccggtatcagaacgagttcacgatctcgacgcccgacaagatccagttcatggac
gtgtcgccgaagcagatcgtgtcggtggcagccgcactggtgccgttcctcgagcacgac
gacgcgaaccgcgcgctgatgggctcgaacatgcagcgccaggccgtgccctgcctgcgc
gccgagaagccgctggtcgggaccggcatcgagcggaccgtcgcaatcgattccggatcc
tcgatcgtggcccgtcgcggcggcacagtggattcggtcgacgcggcgcggatcgtggtg
cgcgtgaacgacgacgagaccgccgccggcgaacccggggtcgacatctacaacctgacc
aagtacgcccgttccaaccagaacacctgcatcaaccagcgcccgctggtgagcgtgggc
gacgagctcgcgcgtggcgatgtgctcgccgacgggtcctcgaccgacatgggcgagctg
gcgctgggccagaacatgatggtcgcgttcatgccctggaacggctacaacttcgaggac
tcgatcctgatctcggagcgggtggtgcaggaggaccggttcacgaccatccacatcgag
gagctgaactgtgtcgcgcgcgacaccaagctcggccaggaagagatcaccgcggacatc
ccgaacgtgtccgagtcgctgctcgcgaagctcgatgaatccggcatcgtctatgtcggt
gccgaggtgcgcccgggcgacatcctggtcggcaaggtcaccccgaagggcgagacccag
ctgacgccggaagagaagctgctgcgcgcgatcttcggcgagaaggcgtccgacgtgaag
gatacctcgctgcgcgtgccctccggcatcgagggaacggtgatcgacgtgcgcgtgttc
acccgcgacggcgtcgagaaggacgcgcgtgcgcggtcgatcgaggaatcggatctggcg
ggcgtgcgcaaggatctgcgcgatcagcagcgcatctacgaggaagatatctacgcccgc
gtggaacggttgctgctgaacaaggtggcggccggtggcccggacgggctcgtcgatggc
accaaggtcaccaagaaatacttggccgggctgtcgcgcaaccactggttcgagatccgc
ctgcgcgacgacgagggcaacgcgcagctcgaggaactcgggcgccagctcgaagagcag
gcggaggcgttcgaaaagcgcttcgagcaccagaaggccaagctggccgccggcgacgac
ctgcctccgggcgtgcagaagatggtgaaggtctacgtcgcggtgaagcggcgcatgcag
ccgggcgacaagatggccggccggcacggcaacaagggcgtgatctcgatgatcgttccc
gaagaggacatgccgttcctcgaagacggaacgccggtggacatcgtgctgaacccgctg
ggcgtgccgtcgcgcatgaatgtcgggcaggtgctggaagtgcacctcggctgggcggcc
aaggggctgggccagaagatcgcccggatgctcgaagcgcaggccgagctcgcgcgtttg
cgcgagtttctcgccgagatttacgcccgcggcgagcgcaaggtggatctggatacgctt
tccgataccgaaatcctgacgctctgccgcaatctgcgtggcggtgtgccgatggcgacg
ccggtgttcgacggcgcgcacgaggacgagatcaaggcgatgctgcgcctggccgacctg
cccgagaccggccaggcggtgctgtacgacgggcggaccggcgatgccttcgaccgtccg
gtgaccgtcggctacatgcacatgctgaagctcaaccacctggtcgacgacaagatgcac
gcgcgttccaccggaccgtactcgctggtcacccagcagccgctgggcggcaaggcccag
ttcggcggccagcgcttcggcgagatggaggtctgggcgctcgaggcctacggcgccgct
tacaccttgcaggagatgctgaccgtgaaggcggacgatgtgcagggtcgcaacaagatg
tacaagaacatcgtcgacggcgaacactacatggaggcgaatgtgccggagtccttcaac
gtgctgatgaaggagatccgcgcgctcggcatcaacatcgagctggaacaggactga
DBGET
integrated database retrieval system
