Thioalkalivibrio paradoxus: THITH_14660
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Entry
THITH_14660 CDS
T03590
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
tti
Thioalkalivibrio paradoxus
Pathway
tti02020
Two-component system
tti02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tti00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
THITH_14660
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
THITH_14660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tti03021
]
THITH_14660
Transcription machinery [BR:
tti03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
THITH_14660
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
HTH_Crp_2
HTH_23
Phage_CII
Motif
Other DBs
NCBI-ProteinID:
AHE99310
UniProt:
W0DR30
LinkDB
All DBs
Position
3166954..3168375
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AA seq
473 aa
AA seq
DB search
MKSSLNLQLGQTLTMTPQLQQAIRLLQLSTLELQLEVQQALESNPMLELAEDATTGDGAP
ETETAPGPETEAPAPDQAGEHESWDSADYGGNSGQRNDPDDRDPFENQAGAGGGLHEHLL
WQLHLSPLNDADRRIGAALIDSINADGYLETDLESLQETLGGETEVGIDEIEAVLHWIQQ
CDPLGVGARNLRECLLIQLHSLPPETPERDAALRVAEHGMDHLARHDFKGLQRELGLTEA
ELARALERIRTLNPRPGSQISDQPPEYVTPDVYVRRDSGGWRVDLNPEIAPRIRINSLYA
GMVRRVSDARDSAFMRNQLQEARWFLKSLHSRNDTLLRVARAIVERQTGFLEQGDVAMQP
LILRDIAEALGMHESTISRVTTQKYMHTPRGVFEFKYFFSSHVGTRDGGECSATAIRAMI
RKLISEEPPDRPMSDSRLAQVLSDRGINVARRTVAKYREAMNLPPSSERRQLV
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
ctgaagtcatcgctgaacctccagctgggtcagaccctgaccatgacgccccagctgcaa
caggcgatccggctgctgcaactctcgacgctggaactgcaactggaggtgcaacaggca
ctggaaagcaatccgatgctggagcttgccgaggacgccaccaccggcgacggcgcgccg
gagaccgagaccgcccccggccccgagaccgaggcacccgcgccggaccaggccggcgaa
cacgagtcctgggacagcgccgactacggaggcaactccggacagcgaaatgaccccgac
gatcgggatccgttcgagaaccaggcgggcgcgggcggcggcctgcacgaacatctgctg
tggcagctgcacctgagcccgctgaacgatgccgaccgcagaatcggcgcggcgctgatc
gacagcatcaacgccgacggctacctcgagaccgacctcgagagcctgcaggaaacgctg
ggaggcgaaaccgaggtcggcatcgacgagatcgaggctgtcctgcattggatccagcaa
tgcgacccgctcggcgtcggtgcccgcaacctgcgcgaatgcctgctgattcagctgcac
agcctcccgccggaaactcccgaacgcgacgccgcgctgcgggtggcagaacacggaatg
gaccacttggcccggcacgacttcaagggcttgcaacgcgaactcggtctgaccgaggcg
gagttggcccgggccctggaacggatccgcacgctgaatccgcggcccggcagccagatc
agcgaccagcccccggaatacgtgacgcccgatgtctacgtgcgccgggacagtggcggc
tggcgcgtggacctgaaccccgagatcgcgccccggatccggatcaacagcctgtacgcc
gggatggtgcgccgggtcagcgacgcgcgcgatagcgcgttcatgcgcaaccagctgcag
gaggcgcgctggttcctgaaaagcctgcacagccgcaacgacacactgctgcgagtggcc
cgtgcgattgtcgagcgccagaccgggttcctggaacagggcgacgtggcgatgcagccg
ctgattctgcgcgacatcgccgaggcgctggggatgcatgaatcgacgatctcccgggtc
accacgcagaagtacatgcatacaccgcgcggagtgttcgaattcaagtacttcttctcg
agccacgtcggcacccgcgatggcggcgaatgttcggccaccgcgatccgtgcgatgatc
cgtaaactgatcagcgaggaaccccccgatcgcccgatgagcgattcgagactggcccag
gtcctgtcggaccggggcatcaacgtggcccggcgtaccgtggccaagtaccgcgaggca
atgaacctgccgccgtcgagtgaacggcggcagctcgtctag
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