Thioalkalivibrio paradoxus: THITH_15005
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Entry
THITH_15005 CDS
T03590
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tti
Thioalkalivibrio paradoxus
Pathway
tti02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tti00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
THITH_15005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tti03021
]
THITH_15005
Transcription machinery [BR:
tti03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
THITH_15005
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMEM120A-B
FKBP15
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
AHE99374
UniProt:
W0DLA3
LinkDB
All DBs
Position
3239181..3241043
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AA seq
620 aa
AA seq
DB search
MNREEQQSQLKELIARGKEQGYLTYTEVNDHLPDSIIDSDQIEDIIAMINDMGIAVHEQA
PDADTLLLSDGSVSSDDDAEDAVAALAAVDSDFGRTTDPVRMYMREMGTVELLTREGEIR
IAKRIEEGLMQVLFALAHHPSAISQLLEQYQRLVENNTRLTDLVVSFINPEAGDGEAVAR
GLAEPGAATEAPPSASADTSDEDSDDTDDDSDEEVEDTGPDPEEARVRFARLAELHNAAQ
EACQRKDYDAYTRAREETARYFMEFKLVPRVVDELTSNLHATIGKIRRYERQIMQLVVAQ
ARMPRKVFLDSFPKNETNLDWIAQAQKAKGKYTEQLAEVADEVVRLQKKLLEIEKRANLS
IAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEM
GREATPEELAERMEMPEDKIRKVMKISKEPISMETPIGDDEDSHLGDFIEDEKVMTPVES
AARAKLSEATREILATLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPTRAELLRSYMDIE
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgggaagagcagcagtcacagctcaaagagctcattgccagaggcaaggagcag
ggctacctgacgtacaccgaggtgaacgaccaccttccggactcgatcatcgactccgat
cagatcgaagacatcatcgcgatgatcaacgacatgggcatcgcggtgcacgaacaggcc
cccgacgcggacacgctgctgctctccgatggcagcgtttcctcggacgacgatgccgag
gacgcggtggcggcactcgcagccgtggacagcgatttcggtcgcaccacagacccggtg
cgcatgtacatgcgcgaaatggggacggtggaactgctgacccgcgagggcgagatccgc
attgccaagcgcatcgaagagggcctgatgcaggttctgttcgcgctcgcgcatcatccg
agcgcgatcagccagctgctcgagcaataccagcgcctggtcgagaacaacacccgcctg
accgatctggtggtgtcgttcatcaacccggaagccggagacggagaggcagtcgcacgc
ggattggccgaaccgggcgcggcgacggaggccccgccctccgcctccgcagataccagc
gacgaagactccgacgacaccgacgacgactccgacgaggaagtcgaggacaccgggccg
gaccccgaagaggcgcgcgtgcgcttcgcgcggctggcggaactgcacaacgccgctcag
gaggcatgccagcgcaaggactacgacgcctacacccgggcacgcgaggaaaccgcgcgc
tacttcatggagttcaagctggtaccgcgggtggtcgacgaactgacgtcgaacctgcac
gcgaccattggcaagatccggcgctacgagcggcagatcatgcagctggtcgtggcgcag
gcacgcatgccgcgcaaggtgttcctcgactcgttcccgaagaacgaaaccaatctcgac
tggatcgcgcaggcgcagaaggccaagggcaagtacaccgaacagctggccgaggtggcc
gacgaagtcgtgcgcctgcagaaaaaactgctggagatcgagaagcgggcgaacctcagc
atcgccgagatcaaggacatcaaccggcggatgtcgatcggcgaggcgaaggcccggcgc
gcgaagaaggaaatggtcgaggccaacctgcgcctggtgatctcgatcgcgaagaaatac
accaaccgcggcctgcagttcctggacctgatccaggagggcaacatcggcctgatgaag
gcagtggacaagttcgaataccggcgcggctacaagttctcgacctacgcgacctggtgg
atccggcaggcgatcacccgctcgatcgccgatcaggcgcgcacgatccgcatcccggtg
catatgatcgagaccatcaacaagctgaaccgggtctcgcggcagatgctgcaggagatg
gggcgcgaagcgacgcccgaggaactcgccgagcgcatggagatgcccgaggacaagatc
cgcaaggtgatgaaaatctccaaggagccgatctcgatggagacgccgatcggcgacgac
gaggactcgcatctcggcgacttcatcgaggacgagaaggtgatgacgccggtcgaatcg
gcggcccgagccaagctctccgaagccacacgcgagatcctggccacgctgaccccgcgc
gaagccaaggtgctgcgcatgcgcttcggcatcgacatgaacaccgaccacaccctcgag
gaagtcggcaagcagttcgacgtgacccgcgagcgcatccgccagatcgaggcgaaggcc
ctgcgcaagctgcgccacccgacccgcgcggagctgctccgctcctatatggacatcgag
taa
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