Thioalkalivibrio paradoxus: THITH_15605
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Entry
THITH_15605 CDS
T03590
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tti
Thioalkalivibrio paradoxus
Brite
KEGG Orthology (KO) [BR:
tti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tti03032
]
THITH_15605
03400 DNA repair and recombination proteins [BR:
tti03400
]
THITH_15605
Enzymes [BR:
tti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
THITH_15605
DNA replication proteins [BR:
tti03032
]
Prokaryotic type
DNA Topoisomerases
THITH_15605
DNA repair and recombination proteins [BR:
tti03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
THITH_15605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
HC2
Motif
Other DBs
NCBI-ProteinID:
AHE99469
UniProt:
W0DLJ5
LinkDB
All DBs
Position
3355584..3358145
Genome browser
AA seq
853 aa
AA seq
DB search
MSKNLVIVESPAKAKTIGKYLGPDFTVLASYGHVRDLVPKEGAVDPDAGFRMNYEVIERN
EKQLQAIARALKGSDALILATDPDREGEAISWHLLEILRERGLLGERTVKRVVFHEITKK
AIQEAVAHPRGLSTDLINAQQARRALDYLVGFNLSPLLWRKIKRGLSAGRVQSPALRMIC
EREDAIERFETREYWTLDAQARRGEQPFTARLTHLDGQKLDQFDLNTEALASDARQRLLD
AAQGSLRVISVEKKQRKRNPAAPFTTSTLQQEASRKLGFTASRTMRVAQQLYEGIDLGSG
AIGLITYMRTDSVTLAGEAIAEIRGLIEERYGADNLPSSPRQYKTKSKNAQEAHEAIRPT
SVRRLPEEVRQRLTSDQARLYELIWKRTMACQMVHATFDTVAADLAPGETAHRFRATGST
LRHAGFIAVYQEGRDEAGADEDEDRRLPELTEGMVVDLLDVSADQHFTEPPPRYTEASLV
KTLEEYGIGRPSTYASIISTLQSREYVEMDGKRFLPTDIGRIVNAFLTQHFTRYVDYDFT
ANLEDELDDIARGEKDWIPVLDGFWKDFRDQVEDKAVSVSRAEAVQSRELGTDPKSGRPV
SVRMGRYGPIVQIGTRDDEEKPRFAGLLPGQKMDQVTLEEALALFKLPRDLGETPEGEPV
QVNVGRFGPYVKYGRKFASLGPDDDVWTIELPRALEIVAEKKALDAQKHIQSFPEHGIEV
LNGRYGPYITDGTKNAKIPKDREPASLTLEECRELLAAAPERRGRRGAKTGSKAGDNTKK
TAAKKTAATQGNGKTAAKKSTTKATTKSTTRKNTTGKASSRKTAADKTDPKKPAKAAARR
TGTGSRPDAVSGN
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaatctcgtcattgtagaatcgccggccaaggccaagacgattggcaaatac
ctcggcccggacttcaccgtactggcttcctatgggcatgtccgggatctggtgccgaag
gaaggggcggtggaccccgacgcggggttccggatgaactacgaggtcatcgagcgcaac
gaaaaacagctccaggcaatcgcgcgggcgctgaagggctcggacgcactgatcctcgcg
acggaccccgaccgcgaaggcgaagcgatctcctggcacctgctcgagatcctgcgcgag
cgcgggctgctcggcgagcgcacggtcaagcgcgtggtcttccacgagatcacgaaaaag
gcgatccaggaggcggtcgcacacccgcgcgggctgtcgacggacctgatcaacgcccag
caggcgcgccgggcgctcgattacctggtcggcttcaacctgtcgccgctcctgtggcgc
aagatcaagcgcgggctttccgccggccgggtccagagccccgcgctgcggatgatctgc
gagcgcgaggacgcaatcgagcgcttcgagacgcgcgaatactggacgctcgatgcccag
gcccggcgcggagaacagccgttcaccgcccgcctgacccacctcgacggccagaaactc
gaccagttcgacctgaacaccgaagcgctggccagcgatgcccgccagcgcctgctcgac
gcggcgcagggcagcctgcgcgtgatctcggtcgaaaagaagcagcgcaagcgcaacccc
gccgcccctttcaccacctccacgctgcagcaggaagcgtcgcgcaagctgggcttcacc
gccagccgcacgatgcgcgtcgcccagcagctgtacgagggcatcgacctcggcagcggc
gcgatcggcctgatcacctacatgcgcaccgactcggtgacgctggccggcgaggcaatc
gccgagattcgcggcctgatcgaggaacgctacggcgccgacaacctgccctcgagcccg
cgccagtacaagaccaagtccaagaacgcgcaggaggcacacgaggcgatccgaccgacg
tcggtgcgccggctgccggaagaggtgcgtcagcgcctgacttccgaccaggcacgcctc
tacgaactgatctggaagcggaccatggcctgccagatggtccacgcgaccttcgatact
gtcgccgcggacctggccccgggcgagacggcgcaccgtttccgcgcgaccggctcgacc
ctgcgccacgcgggcttcatcgcggtataccaggaaggccgcgacgaggcgggagccgac
gaggacgaggatcgccggctgccggaactgaccgaggggatggtcgtcgacctgctcgac
gtcagcgccgaccagcatttcacagagccaccaccgcgctacaccgaagcgagcctggtg
aaaacgctggaggaatacgggatcggccggccgtcgacgtatgccagcatcatttccacg
ctgcagtcgcgcgaatacgtggaaatggacggcaagcgcttcttgcccaccgacatcggc
cggatcgtgaacgcctttctgacccagcacttcacccgctacgtcgactacgacttcacc
gcgaacctggaagatgagctggatgacatcgcgcgcggtgagaaggactggattccggtt
ctggacggcttctggaaggatttccgcgaccaggtcgaagacaaggccgtgagcgtcagc
cgggccgaggccgtgcagtcgcgcgagctcggcaccgacccgaagagcgggcgcccggtc
agcgtgcgcatgggccgctacggcccgatcgtgcagatcggcacccgggacgacgaggaa
aagccgcggttcgccggcctgttgcccggccagaagatggatcaggtcacgctggaggaa
gcgctggcgctgttcaagctgccgcgtgacctcggggagaccccggaaggtgaaccggtg
caggtgaacgttgggcgtttcggcccgtatgtgaagtacggccggaagttcgcctcgctc
ggcccggacgacgacgtctggaccatcgagcttccgcgggcgctcgagatcgtcgccgag
aagaaggcgctggacgcacagaagcacatccaatcgttcccggagcacgggatcgaggtg
ctgaacggccgctacggcccctacatcaccgacggaaccaagaacgcgaagatcccgaag
gatcgggaacccgcgtcgctgacgctcgaggaatgccgcgaactgctcgcggcggccccg
gaacggcgtgggcgtcgcggtgccaagaccggcagcaaggctggagacaacaccaagaag
accgccgccaagaagacggccgccacgcagggcaacggcaagaccgcagcgaagaagtcc
acgacgaaggccaccaccaagtccacgacccgcaagaacacgaccggaaaggcctcaagc
cgcaagaccgccgcggacaagaccgaccccaagaaaccggccaaggccgcggcgcggcgc
accggcactggcagtcggcccgacgcggtcagcggcaactga
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