Thioalkalivibrio paradoxus: THITH_17315
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Entry
THITH_17315 CDS
T03590
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tti
Thioalkalivibrio paradoxus
Pathway
tti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THITH_17315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tti03019
]
THITH_17315
03009 Ribosome biogenesis [BR:
tti03009
]
THITH_17315
Enzymes [BR:
tti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THITH_17315
Messenger RNA biogenesis [BR:
tti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THITH_17315
Ribosome biogenesis [BR:
tti03009
]
Prokaryotic type
rRNA helicases
THITH_17315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Flavi_DEAD
CMS1
Motif
Other DBs
NCBI-ProteinID:
AHE99761
UniProt:
W0DMU0
LinkDB
All DBs
Position
complement(3709085..3711034)
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AA seq
649 aa
AA seq
DB search
MPHSPSFSELGLSEPLALAVERLGFQQPTPVQAACIPALLSGRDVLGEAQTGTGKTGAFG
LPLIERVDASERRVQALVLTPTRELANQVAVALGGFAEGIGGIEILPVYGGQPMGAQLRR
LREGPQIVVGTPGRVVDHIKRGTLALEGLRLVVLDEADEMLRMGFIDDIEWILEQTPAER
QTALFSATMPAPIRRIAHRHLREPEEIRIGAGNEAGADIDQGYCLVDGRHKLEALGRLLE
VEPDRDAAIVFARTKAATLEIAEGLATRGHAVSALNGDMQQNERERVVSDLRDGRIDVIV
ATDVAARGIDVPRISHVFNYDAPGDAEAYVHRIGRTGRAGRKGRAILFLEPRRRRILREI
ETLTRKPVRPLPVPDLEAVATSRQARFADRIESLLASGHSQRHGELVDVLLARCNASERD
LAGALLALATELTPLLTPEHQEQDPLAAAARASASSRRGGDGPRVRGSAGDRGADPGNRP
RTDRRVPDEDRVRYYMPIGRRDGIGAREIVGALTNEGGLSGGDIGRIGLMDHYSHVDLPA
ALNDSAVRRLGRIHVAQRRLELTLETPELAGERASLSGAPSKHVRDERRLAGVPKRPRAK
GGESAAKRKPRAWAGSGRTPGRGPAPGKPYPPRGSRNVPGTLAIRRKPA
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgccgcattccccgtccttctccgagctcggcctgtccgagccgctcgcgctcgcggtc
gagcgcctgggcttccagcaacccacgcccgtccaggcggcgtgtatcccggccttgctg
agcggccgcgacgtgctgggtgaagcccagaccggcaccggcaagaccggtgcgttcggc
ctgccgctgatcgagcgcgtcgacgccagcgagcgccgcgtccaggcgctggtgctgacc
cccacgcgcgagctcgcaaaccaggtggcggtcgcactcggcggctttgccgaagggatc
ggcgggatcgaaatcctgcccgtctacggcggccagcccatgggcgcgcagctgcgccgg
ctgcgcgaaggcccgcagatcgtggtcggtacccccgggcgcgtggtcgaccacatcaag
cgcggcacgctggcgctggaaggtctgcgcctggtggtgctcgacgaggccgacgagatg
ctccggatgggcttcatcgacgacatcgaatggatcctggagcagaccccggccgaacgg
cagacggcgctgttttcggcgacgatgccggcgccgatccggcgcatcgcgcatcgccat
ctgcgcgagcccgaggagatccgcatcggcgccggcaacgaggccggggccgacatcgac
caggggtattgcctggtcgacgggcgccacaagctcgaggcgctcgggcggctgctggaa
gtcgagccggaccgcgatgcggcgatcgtgttcgcgcgcaccaaggcggcaacgctcgag
atcgccgaggggctcgccacccgcgggcacgcggtgtccgcgctgaacggcgacatgcag
cagaacgagcgcgaacgcgtcgtctccgatctgcgcgacggccgcatcgacgtgatcgtc
gccaccgacgtggcggcccgcggcatcgatgtgccgcgcatcagccatgtgttcaactac
gacgcacccggcgacgccgaggcctatgtgcaccggatcggccgcaccggccgcgccgga
cgcaagggtcgcgcgattctgttcctggaaccgcggcggcgccgtatcctgcgcgagatc
gagacgctgacccgcaaaccggtccggccgctgccggtgccagacctcgaagccgtcgcc
accagccggcaggcgcgcttcgctgatcggatcgagtcactgctcgcatccgggcattcg
caacgccacggcgagctggtcgatgtgctgctggcgcgctgcaacgcgtcggagcgcgac
ctcgccggcgcgctgttggcgctggctaccgaactgaccccgctgctgacccccgaacac
caggagcaggatccgctcgcggcggcggctcgggcgagcgcgtcttcgcgccgtggcggc
gacgggccgcgtgtccgcggcagcgctggcgatcgcggggccgaccccgggaatcgtccg
cgcaccgaccgtcgcgtcccggacgaggaccgggtgcgctactacatgcccatcggtcgg
cgcgacggcatcggcgcccgcgagatcgtcggtgcgttgacgaacgaaggcgggctgtcc
gggggcgacatcggccgtatcggcctgatggatcattacagccatgtcgatcttcccgcg
gccctgaacgattccgcggtccgccgtctgggccggatccatgtcgcgcagcgccggctg
gagcttaccctggaaacgccggaactcgcgggcgagcgcgccagcctgtctggcgccccg
tcaaagcacgtccgggacgaacggcgtctggctggcgtaccgaagcgcccccgcgcgaag
ggcggcgagtcggccgcgaagcgcaagccacgggcctgggcgggctccggcagaactccg
ggccgcggcccggccccgggcaagccctatcccccgcgcggatcccgcaatgtccccggc
acgctcgcgatccggcgcaagcccgcctga
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