Thermus thermophilus HB8: TTHA0109
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Entry
TTHA0109 CDS
T00220
Symbol
TTHA0109
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ttj
Thermus thermophilus HB8
Pathway
ttj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TTHA0109 (TTHA0109)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttj03019
]
TTHA0109 (TTHA0109)
03009 Ribosome biogenesis [BR:
ttj03009
]
TTHA0109 (TTHA0109)
Enzymes [BR:
ttj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TTHA0109 (TTHA0109)
Messenger RNA biogenesis [BR:
ttj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TTHA0109 (TTHA0109)
Ribosome biogenesis [BR:
ttj03009
]
Prokaryotic type
rRNA helicases
TTHA0109 (TTHA0109)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Hera_DD
Hera_RBD
Helicase_C
ResIII
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
BAD69932
UniProt:
Q5SM34
LinkDB
All DBs
Position
1:complement(108345..109898)
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AA seq
517 aa
AA seq
DB search
MGPERQSMEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTL
AFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQ
KEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP
PSRQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEEEAVPAPVRGRLEVLSDLL
YVASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRVLV
ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEAL
ERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLHLDFAGRLFSEGRVEVVAA
LLALLLGGAPKEKSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKIAEAEGGLYV
DLRPEARPEVAGLRLEPARRVEGLLEIPSRTRRPARA
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
gtgggcccggaaaggcagagcatggagtttaaagactttcccctgaagccagaaatcctg
gaagccctccacgggcgcggcctcaccacccccacccccatccaggcggcggcgctcccc
ttggccctggagggcaaggacctcatcggccaggcccgcaccggcaccggcaagaccctg
gccttcgccctccccatcgccgaaaggcttgcgccaagccaggagagggggcggaagccc
cgggccctcgtcctcacccccacgcgggagctcgccctccaggtggcctccgagctcacc
gccgtggccccccacctgaaggtggtggccgtctacgggggcaccgggtacggcaagcag
aaggaggccctcctccggggggcggacgcggtggtggccaccccggggcgggccctggac
tacctgcggcagggggtcttggacctctcccgggtggaggtcgccgtcttggacgaggcg
gacgagatgctctccatgggctttgaggaggaggtggaggccctcctttccgccacgccc
ccttcccgccagaccctcctcttctccgctaccctcccctcctgggccaagaggctcgcc
gagcgctacatgaaaaaccccgtcctcatcaacgtcatcaaggacgagcccgtcacctac
gaggaggaagcggtcccggccccggtgcgggggcggcttgaggtcctctccgaccttctt
tacgtggcctcccccgatcgggccatggtcttcacccggaccaaggcggagacggaggag
atcgcccaaggccttttgcgcttgggccacctggcccaggccctccacggggacctctcc
cagggcgagcgggaacgggtcctgggggccttccgccaaggggaggtgcgggtcctggtg
gccacggacgtggccgcccgcggcctggacatcccccaggtggacctggtggtgcactac
cgcctgcccgaccgggcggaggcctaccagcaccgctcgggccgcacgggccgggcgggc
cggggagggcgggtcgtcctcctctacgggcccagggagcgccgggacgtggaggccttg
gagcgggcggtggggcgccgcttcaagcgggtgaacccccctaccccggaggaggtcctc
gaggccaagtggcgccaccttttggcccgcctcgcccgggtgccggagaaggactaccgg
ctccacctggactttgcgggccgcctcttcagcgaggggcgggtggaggtggtggccgcc
ctcctcgccctcctcctgggcggggcgcccaaggagaagagcctcctcaccggggaggag
gggtggcgcacctacaaggccacggggccgaggctctccctgccccggctcgtggccctc
ttgaaggggcagggcctcgaggtgggcaagatcgctgaggccgaagggggcctgtacgtg
gacctccgccccgaggcccggccggaggtggccggcctccggctggagcccgccaggagg
gtggagggcctcttggagatcccttcccgcacgaggcgcccggccagggcgtag
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