Thermus thermophilus HB8: TTHA1812
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Entry
TTHA1812 CDS
T00220
Symbol
TTHA1812
Name
(GenBank) DNA-directed RNA polymerase beta' chain (RpoC)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ttj
Thermus thermophilus HB8
Pathway
ttj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ttj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TTHA1812 (TTHA1812)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttj03021
]
TTHA1812 (TTHA1812)
03400 DNA repair and recombination proteins [BR:
ttj03400
]
TTHA1812 (TTHA1812)
Enzymes [BR:
ttj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TTHA1812 (TTHA1812)
Transcription machinery [BR:
ttj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TTHA1812 (TTHA1812)
DNA repair and recombination proteins [BR:
ttj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TTHA1812 (TTHA1812)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BAD71635
UniProt:
Q8RQE8
Structure
PDB
PDBj
LinkDB
All DBs
Position
1:complement(1689655..1694229)
Genome browser
AA seq
1524 aa
AA seq
DB search
MKKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECAC
GKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSA
TELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVK
DGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGE
ILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEK
GQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGAR
VEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDV
LADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEE
MKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDL
NDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPL
RSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKK
MEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVL
VEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAK
PSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLK
YVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELI
QLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEK
KQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPL
YVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKG
GADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADI
EAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGV
CQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVI
ELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVE
AGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVE
VTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASF
QNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARK
EAVEAKERPAARRGVKREQPGKQA
NT seq
4575 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaggttcgtaaggttcgcatcgctttggcctccccggagaagatccgctcc
tggagctacggggaggtggagaagcccgagaccatcaactaccgcaccctcaagcccgag
cgggacggcctctttgacgagcgcatcttcggccccatcaaggactacgagtgcgcctgc
ggcaagtacaagcgccagcgctttgagggcaaggtgtgcgagcggtgtggcgtggaggtg
acgaagagcatcgtccgccgctaccgcatggggcacattgagctcgccacccccgccgcc
cacatctggttcgtcaaggacgtcccctccaagatcgggaccctcctggacctttccgcc
accgagctggagcaggtcctctacttcagcaagtacatcgtcttggatcccaagggggcc
atcctgaacggggtcccggtggagaagcgccagctcctcaccgacgaggagtaccgggag
ctccgctacggcaagcaggagacctaccccctgccccccggggtggacgcgctggtgaag
gacggggaggaggtggtaaagggccaggagcttgcccccggggtggtgagccgcctggac
ggcgtggccctctaccgcttcccccgccgcgtccgggtggagtacgtgaagaaggagcgg
gccgggctcaggcttcccctcgccgcctgggtggagaaggaggcctacaagcccggcgaa
atcctcgccgagctccccgagccctacctcttccgggccgaggaggagggcgtggtggag
cttaaggagctggaggaaggggctttcctcgtcctccgccgggaggacgagccggtggcc
acctacttcctccccgtgggcatgacgcccctcgtggtccacggggagatcgtggagaag
ggccagcccctggccgaggccaagggccttctccgcatgccccgccaggtccgggccgcc
caggtggaggcggaggaggagggggagacggtctacctcaccctcttcctggagtggacg
gagcccaaggactaccgcgtccagccccacatgaacgtggtggtccccgagggggcccgg
gtggaggcgggggacaagatcgtggccgccattgaccccgaggaggaggtcatcgccgag
gccgagggggtggtccacctccacgagcccgccagcatcctggtggtcaaggcccgggtc
tacccctttgaggacgacgtggaggtttccaccggggaccgggtggccccgggggacgtc
ctcgccgacgggggcaaggtcaaaagcgacgtctacggccgggtggaggtggacctggtc
cgcaacgtggtccgggtggtggagtcctacgacattgacgcccgcatgggggccgaggcc
atccagcagctcctcaaggagctggacctcgaggccctggagaaggagcttctggaggag
atgaagcacccctcccgggcccggcgggccaaggccaggaagcgcctggaggtggtgcgg
gccttcctggactcggggaaccggcccgagtggatgatcctcgaggccgtccccgtcctt
cccccggacctccggcccatggtccaggtggacggcggccgcttcgccacgagcgacctc
aacgacctctaccgccgcctcatcaaccgcaacaaccggctgaagaagctcttggcccag
ggggcccccgagatcatcatccgcaacgagaagcggatgctccaggaggcggtggacgcc
ctcctggacaacggccgccgcggcgctcccgtgaccaaccccggctccgaccggcccctc
cgtagcctcaccgacatcctctccggcaagcagggccgcttccgccagaacctcttgggc
aagcgggtggactactcgggccggagcgtgatcgtggtggggccccagctcaagctccac
cagtgcggcctgcccaagcggatggccctggagctcttcaagcccttcctcctcaagaag
atggaggagaagggcatcgcccccaacgtcaaggcggcgcggcgcatgctggagcgccag
cgggacatcaaggacgaggtgtgggacgccttggaggaggtgatccacggcaaggtggtc
ctcttgaaccgcgcccccaccctgcaccgcttgggcatccaggccttccagcccgtcttg
gtggaggggcagtccatccagctccaccccctggtctgcgaggccttcaacgccgacttt
gacggggaccagatggccgtccacgtccccctctcctccttcgcccaggccgaggcccgc
atccagatgctctccgcccacaacctcctctccccggcctccggggagcccctggccaag
cccagccgggacatcatcctgggcctctactacatcacccaggtgcgcaaggagaagaag
ggggcgggcctggagttcgccacccccgaggaggccctggccgcccacgagcggggagag
gtggccctgaacgcccccatcaaggtggcgggcagggagaccagcgtgggccggctcaag
tacgtcttcgccaaccccgacgaggccctcctcgccgtggcccacggcatcgtggacctg
caggacgtggtcaccgtccgctacatgggcaagcggctggagacgagcccgggccgcatc
ctcttcgcccgcatcgtggccgaggcggtggaggacgagaaggtggcctgggagctcatc
cagctggacgtgccccaggagaagaactccctcaaggacctggtctaccaggccttcctc
cgcctggggatggagaagaccgccaggctcctggacgccctcaagtactacggcttcacc
ttctccaccacgagcggcatcaccatcggcattgacgacgccgtgatcccggaggagaag
aagcagtacctggaggaggccgaccgcaagctcctccagattgagcaggcctacgagatg
ggcttcctcaccgaccgggagcggtacgaccagatcctccagctctggaccgagaccacg
gagaaggtcacccaggcggtcttcaagaactttgaggagaactaccccttcaaccccctc
tacgtcatggcccagtccggggcccggggcaacccgcagcagatccgccagctctgcggc
ctgcgcggcctcatgcagaagccctcgggcgagacctttgaggtgccggtgcgctcctcc
ttccgcgagggcctcaccgtcttggagtacttcatctccagccacggggcccgtaagggc
ggggcggacaccgccctccgcaccgccgactccggctacctcacccgcaagctcgtggac
gtgacccacgagatcgtggtgcgggaggcggactgcggcaccaccaactacatctccgtt
cccctcttccagcccgacgaggtgacccgctccttgcgcctgaggaagcgcgcggacatt
gaggcgggcctctacgggcgcgtcctggcccgggaggtggaggtcctgggggtgcgcctc
gaggagggccgctacctctccatggacgacgtccacctcctcatcaaggccgccgaggcc
ggggagatccaggaggtgcccgtccgcagccccctcacctgccagacccgctacggggtc
tgccagaagtgctacgggtacgacctctccatggcccggcccgtctccatcggcgaggcg
gtgggcatcgtggccgcccagtccatcggcgagcccggcacccagctcaccatgcgcacc
ttccacacgggcggcgtggccggggccgcggacatcacccagggtctgccccgcgtcatt
gagctctttgaggcccggcgccccaaggccaaggcggtgatctccgagattgacggggtg
gtgcgcattgaggagacggaggagaagctctccgtcttcgtggagtccgagggcttctcc
aaggagtacaagctccccaaggaggcgcgccttctcgtcaaggacggggactacgtggag
gcgggccagcccctcacccgcggggccattgacccccaccagctcttggaggccaagggc
cccgaggcggtggagcgctacctggtggaggagatccagaaggtctaccgggcccagggc
gtgaagctgcacgacaagcacattgagatcgtggtccggcagatgatgaagtacgtggag
gtcaccgaccccggggacagccgcctcctcgagggccaggtcctggagaagtgggacgtg
gaggccctgaacgagaggctcatcgccgagggcaagaccccggtggcctggaagcccctc
ctcatgggggtcacgaagagcgccctctccaccaagagctggctctccgccgccagcttc
cagaacaccacccacgtcctcaccgaggcggccatcgccgggaagaaggacgagctcatc
ggcctcaaggagaacgtcatcctgggccgcctgatcccggcgggcacgggttcggacttc
gtccgcttcacccaggtggtggaccagaagaccctgaaggccattgaggaggcccgcaag
gaggcggtggaggccaaggagcggcccgccgcccggcgcggggtcaagcgggagcagccc
ggcaagcaggcttaa
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integrated database retrieval system
