Thermus thermophilus JL-18: TtJL18_0508
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Entry
TtJL18_0508 CDS
T02009
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ttl
Thermus thermophilus JL-18
Brite
KEGG Orthology (KO) [BR:
ttl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ttl03016
]
TtJL18_0508
Enzymes [BR:
ttl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
TtJL18_0508
Transfer RNA biogenesis [BR:
ttl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
TtJL18_0508
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GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
WHD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
AFH38414
UniProt:
H9ZQ04
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All DBs
Position
complement(444338..446134)
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AA seq
598 aa
AA seq
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MAVKQALVVYKGKPALAEEKGGRLELTLEGGAKLRVRPKDVLFLHPGPASLGLKVPEGEE
EAAWELLEGQTVSLRELAELVYGAYTPEAALGAYLLAQKGERFVLEGEGVRARTREELRA
LEEAERKRAERERAFQEALKRLKEGSPAPEDRPLLAEVEALARGERKESPVLRALSLPET
PEAAHAFLLRLGLWQRENPHPRRLGLPLQPPDLPVPPLPEEDRVDLTHLPAFAIDDEGSQ
DPDDAVFAERVEGGFRLFVHVADVAALVPPGSPLDEEALRRGANLYLPEGTVPMLPPAVT
EALGLGLREVSPALTFELWVSEEGELLEERVYPSWVRVKRLTYREALGVEALRPLEALAE
AFRARRLAAGALEIALPEVKVRVEGEEVRITPLPPYPSRVWVREAMLLAGYAAAHLAVRE
GLPFPFATQEAPSRRVEGEGLAAMWEQRKAMKRAQLKAVPAPHKGLGLPLYAQVTSPLRR
YLDLVAHQQLRAWLKGERPLSQAEVLERVGAAEAVADLVREAERKSKLHWTLLHLEAKGY
EGPGVLVERRGGQGVFLLPELGLSAQVALSQALPLNAEVRLRFLEADLPALEARFALV
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggccgtcaagcaagcccttgtcgtctacaaaggcaaacccgccctcgccgaggagaag
gggggccgcttggaactcacgctggaaggaggcgcaaagctgagggtgcgtcccaaggac
gtcctcttcctccacccggggcccgcctccttaggcctgaaggtgcccgagggggaggag
gaggccgcctgggaactcctggaggggcagacggtgagccttagggagctcgccgagctg
gtttacggggcctacaccccggaggccgctctaggcgcctacctcctcgcccagaagggg
gagcgcttcgtcctcgagggggaaggggtccgggcccgcacccgggaggagcttcgggcc
ttagaggaggcggaaaggaagcgggccgagcgggagcgggccttccaggaggccctgaag
cgcctaaaggagggaagccccgcccccgaggaccgccccctcctcgccgaggtggaggcc
ctggcccggggggagaggaaggaaagccccgtcctccgggccctgagcctccccgaaacc
cccgaggcggcccacgccttcctcctccgcctgggcctttggcaaagggaaaacccccac
ccaaggaggctcggccttcccctccagcccccggacctccccgtcccccccctccccgag
gaggaccgggtggacctcacccacctccccgccttcgccatagacgacgagggaagccag
gacccggacgacgccgtcttcgccgagcgggtggaggggggcttccgcctcttcgtccac
gtggccgacgtggccgccctcgtcccccccggaagccccctggacgaggaggctttgcgc
cggggggcgaacctctacctgcccgaggggacggtgcccatgctcccccccgccgtcacc
gaggccctcggcctgggcctaagggaggtctccccggccctcacctttgagctatgggtc
tcggaggaaggagagcttctggaggagcgggtctacccctcttgggtgcgggtgaagcgc
ctcacctaccgggaggccctgggggtggaggccctgaggcccctggaggccctggcggag
gccttccgggccaggcgcctcgccgcgggcgccttggagatcgccctccccgaggtgaag
gtgcgggtggagggggaggaggtccggatcacccccttgcccccctacccaagccgcgtc
tgggtgcgggaggccatgctcctcgccgggtacgccgccgcccacctggcggtgcgggag
gggcttcccttccccttcgccacccaggaggccccctcgaggcgggtggagggggagggg
cttgccgccatgtgggagcagaggaaggccatgaagcgggcccagctcaaggcggtgccc
gccccccacaagggcttaggccttcccctctacgcccaggtgacgagccccctaaggcgc
tacctggacctggtggcccaccagcaactcagggcctggttaaagggggaaaggcccctc
tcccaggccgaggtcctggaaagggtgggggcggcggaggcggtggccgacctggtgcgg
gaggcggagcgcaagagcaagctccactggaccctcctccacctcgaggccaaggggtac
gaggggcccggcgtcctggtggaaaggcggggggggcagggggtcttcctcctccccgag
ctcgggctttccgcccaggtggccctctcccaggcccttcccctaaacgccgaggtccgc
ctccgcttcctggaggcggaccttccggccctcgaggcccgcttcgccctcgtttaa
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