Thermus thermophilus JL-18: TtJL18_0607
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Entry
TtJL18_0607 CDS
T02009
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
ttl
Thermus thermophilus JL-18
Pathway
ttl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ttl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TtJL18_0607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ttl03400
]
TtJL18_0607
DNA repair and recombination proteins [BR:
ttl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TtJL18_0607
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TtJL18_0607
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_21
AAA_29
AAA_16
nSTAND1
AAA_22
AAA_25
nSTAND3
AAA_23
ATPase
AAA_18
RsgA_GTPase
AAA_33
NACHT
nSTAND_NTPase5
NTPase_1
APS_kinase
DnaJ_CXXCXGXG
AAA_28
RNA12
cobW
AAA_15
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AFH38512
UniProt:
H9ZQA2
LinkDB
All DBs
Position
complement(536655..539513)
Genome browser
AA seq
952 aa
AA seq
DB search
MDRIVIRGAREHNLKNISLELPRGKFIVITGVSGSGKSTLAFDTIYAEGQRRYVESLSSY
ARQFLGVMDKPEVESIEGLSPAISIDQKTTSHNPRSTVGTVTEIHDYLRLLFARVGQAFC
PECGRPIEKQSASEITDRLLRRPPGTRAILMAPLVRGRKGEYRKLFQQLLKEGYARVRVD
GVLYLLEEAQGLSLEKYEKHDIDLVIDRVVLKEEERPRIAEAVELALLRGEGLLRVLYPD
TGEEELFSEKFACPEHGSVLEELEPRIFSFNSPYGACPACSGLGYRQEFDPELVVNPELS
LAEGAILPWSRGRDTGRSYLWDRLRALAEHLGFDLKTPFKDLPEEAKRAVLYGLPEPFEV
VFRRGGKETFRVEVRYEGVIPWLEKRYQESDSEGVREALEGFMSLRPCPACGGTRYKREV
LSVKVAGRNIAEVSALPVREALAFFQGLEKTLSPFQAQIARPILREIVERLGFLVDVGLD
YLTLDRAANTLSGGEAQRIRLATQVGSGLTGVLYVLDEPSIGLHPRDNQRLIRTLKRLRD
LGNTLIVVEHDEETMRAADWIVDMGPGAGIHGGEVVAQGTLEDILKSPQSLTGAYLRGEK
RIPVPEARRKGNGKWLVLKGARAHNLKNVTLRIPLGRFVAITGPSGSGKSTLVHDVLYAA
LAQRLMRAKTTPGPYEALEGVEHLDKVIEIDQSPIGRTPRSNPATYTGVFDEIRDLFAKT
PEARKRGYGPGRFSFNVKGGRCEACGGDGTVKIEMLFLPDLYVPCEVCKGKRYNKETLEV
KLRGKSIADVLDMTVEEALDFFQNVPSIARKLQLMVDVGLGYMKLGQPSPTLSGGEAQRI
KLATELGRKATGRTLYILDEPTTGLHFDDVAKLLSVLHRLVDAGNTVVVIEHNLDVVKTA
DWVIDLGPEGGDRGGEIVAEGTPEEVALTGSPTGAFLARIPEIAARIGVAAD
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcatcgtcatccggggcgctcgggagcacaacctgaagaacatcagcctggag
cttccccggggcaagttcatcgtcatcaccggggtttccggctcggggaaaagcaccttg
gcctttgacaccatctacgccgaggggcagaggcgctacgtggaaagcctttccagctac
gcccggcagtttctgggcgtgatggacaagcccgaggtggagagcattgaggggctttcc
ccggccatctccattgaccagaagaccacgagccacaacccccgctccaccgtgggcacc
gtcacggagatccacgactacctccgcctcctcttcgcccgcgtggggcaggccttctgc
cccgagtgcggccgtcccattgagaagcagtcggcgagcgagatcaccgaccgcctcctc
aggcgtcctcccggcacccgggctatccttatggcccccttggtgcgggggagaaaagga
gagtacaggaagctctttcagcagctcctgaaggaaggctacgcccgggtgcgggtggac
ggggtcctctacctcctggaggaggcccaaggcctcagcctggagaagtacgagaagcac
gacattgacctggtgattgaccgggtggtcctgaaggaggaggagcgcccccgcatcgcc
gaggcggtggagctcgccctgcttcggggggaaggccttcttagggttctctacccggac
accggggaagaggagctcttctcggagaagttcgcctgccccgagcacggctcggtcctg
gaggagctggagccccgcatcttctccttcaacagcccctacggggcctgccccgcctgc
tccggcctcggctaccgccaggagtttgaccccgagctcgtggtgaaccccgagctctcc
ctggccgagggggccatcctcccctggtcccgggggcgggacacggggaggagctacctc
tgggaccgtcttagggccctggccgagcacctgggctttgacctcaagacccccttcaag
gacctgccggaggaggcgaagcgcgccgtcctctacggccttcccgaaccctttgaggtg
gtcttccgccggggcggcaaggaaaccttccgggtggaggtgcggtacgagggggtgatc
ccctggctggagaagcgctaccaggagtccgactccgagggggtgcgggaggccctggag
ggcttcatgtccttaaggccgtgccccgcctgcgggggcacccggtacaagcgggaggtc
ctctcggtgaaggtggcggggaggaacatcgccgaggtctccgccctccccgtgcgggag
gccttggcgttcttccagggcctggagaagaccctttcccccttccaggcccagatcgcc
cggcccatcctcagggagatcgtggagcggctcggcttcctggtggacgtgggcctggac
tacctcaccctggaccgggcggccaacaccctctccggaggcgaggcccagaggatccgg
ctcgcgacccaggtgggctcgggcctcaccggggtcctctacgtgctggacgagcccagc
atcggcctccacccccgggacaaccaacgcctcatccgcaccctcaaaaggctccgcgac
ctgggcaacaccctcatcgtggtggaacacgacgaggagaccatgcgggccgccgactgg
atcgtggacatgggtccgggggcggggatccacggaggggaggtggtggcccagggcacc
ctggaggacatcctcaaaagcccgcaaagcctcaccggggcctacctcaggggggagaag
aggatccccgtgcccgaggcgaggcgcaaggggaacggcaagtggctcgtcctcaagggg
gcgcgggcgcacaacctgaagaacgtcaccttgaggatccccctgggccgcttcgtggcc
atcaccggcccctcgggctcggggaagagcaccctcgtccacgacgtcctctacgccgcc
ctggcccagcggctcatgcgggccaagacgacccccgggccctacgaggccctggagggg
gtggagcacctggacaaggtcatcgagattgaccagtcccccatcggccgcaccccccgg
tccaaccccgccacctacaccggggtctttgacgagatccgcgacctcttcgccaagacc
ccggaggccaggaagcgggggtacggcccaggccgcttctccttcaacgtcaagggcggg
cggtgcgaggcctgcggcggggacgggacggtgaagattgagatgctcttcctccccgac
ctctacgtcccctgcgaggtctgcaagggcaagcgctacaacaaggagaccctggaggtc
aagctcagggggaagagcatcgccgacgttctggacatgacggtggaggaggccctggac
ttcttccagaacgtcccctccatcgcccggaagctccagctcatggtggacgtgggcctg
gggtacatgaagctgggccagccctcccccaccctctccgggggggaggcccagaggatc
aagctcgccacggagctcggccgcaaggccacgggccgcaccctctacatcctggacgag
cccaccacgggcctgcactttgacgatgtggcgaagctcctctcggtcctccaccggctg
gtggacgcgggcaacaccgtggtggtcattgagcacaacctggacgtggtgaagaccgcg
gactgggtgattgacctgggccccgagggcggggaccggggcggggagatcgtggccgag
ggcacccccgaggaggtggccctcacggggagccccacgggggccttcctcgcccggatc
cccgagatcgccgcccggatcggagtggcggcggactaa
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