Thermus thermophilus JL-18: TtJL18_1159
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Entry
TtJL18_1159 CDS
T02009
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ttl
Thermus thermophilus JL-18
Pathway
ttl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ttl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TtJL18_1159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ttl03400
]
TtJL18_1159
Enzymes [BR:
ttl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TtJL18_1159
DNA repair and recombination proteins [BR:
ttl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TtJL18_1159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
CarD_TRCF_RID
Helicase_C
TRCF
ResIII
UvrB_inter
AAA_16
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFH39052
UniProt:
H9ZRU2
LinkDB
All DBs
Position
complement(1069857..1072793)
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AA seq
978 aa
AA seq
DB search
MEIALERIYGHRLALPQVGAALLFAQEAPPALLLVPEARLRRYRDLSAFGAKVYVNPGLE
ALEEKALFVLSYEEALSPFPEDPEAWRLLLEVGRAYPREALLSRLLKLGYARDEDYRVLG
EVVELGEVRLEFFGDELERLVVRGEERRRHVLLPKPGKAEGFTSKKVLHFPGPVYLDTPA
LAPKALWPLLAGRPVVALGGGVELPPLDLGAKPLPPYRGSLKALEKDLARWLAEGKRVHL
FVGHARTLEYLKRRLQAFSPLILDRFPGPKGRLALLFGDFEGGAEWGEWVLLTEALVFAT
GGVRARVRVGEGLSDPGALSPGDYLIHPEHGVGQYLGLETREVLGVKRDYLVLRYKGEGK
LYLPVEQLPLLKRHPGTTDDPPELSSLGKNEWQRAKERARKDVEELAGRLLVLQAKRKAT
PGRAFPPLPEWDPLVEKGFPYELTPDQKRALEEVLRDLESPHPMDRLVSGDVGFGKTEVA
LRAAHRVVGHGAQVAFLVPTTLLAEQHGKTFRERFQGLPVRVAVLSRFTPPKEEEAILKG
LAEGTVDIVIGTHRLLQEDVRFRDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSATP
IPRTLYSALVGLKDLSSIQTPPPGRKPIKTFLAPFDPLLVREAILFELERGGKVFYVHDR
VASIEARRRFLESLVPEARIGVVHGQMPESLIEETMLLFAEGAYDVLLATTIIEAGLDVP
EANTILIERADRLGLATLYQLRGRVGRREEEAYAYLFHPPRLTEAAEKRLAAIADLSDLG
SGHLLAERDMEIRGVGNLLGPEQHGHIRALSLEVYTELLEEAIRKLKGEVKEERRHVTLD
LALSARLPAEYVGSLEARSRYYSRFAEAKSLAELSRLVRELKERYGPLPEEAENFVNLTR
LRLVAERKGVVSITEGLTHLEVVFPRYPLDYDARGLKGLPYRVELTQYPPGFRLEKKGLR
PRDYPEALMEVLYLFADL
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgcgctagagaggatctacggccaccgcctggcgctcccgcaggtgggggcg
gccctgctttttgcccaggaggcccccccggccctcctcctcgtccccgaggcgcggctt
aggcgctaccgggacctctccgccttcggggccaaggtctacgtgaaccccggcctcgag
gccctggaggaaaaggccctcttcgtcctctcctacgaggaggccctaagccccttcccc
gaggaccccgaggcctggcggcttcttctggaggtgggccgcgcctacccccgggaggcc
ctcctctcccgcctcctcaagctgggctacgcccgggacgaggactaccgcgtcctgggg
gaggtggtggagctcggcgaggtgcgcctggagttcttcggggacgagctggaaaggctt
gtggtccggggggaggaaaggcggcgccacgtcctcctgcccaagccggggaaggcggag
ggcttcacctccaagaaggtcctccacttccccggccccgtctacctggacacccccgcc
ctcgcccccaaggccctttggcccctccttgcgggaaggcccgtggtggccttggggggt
ggcgtggagcttccccccctggaccttggcgctaagccccttcccccttaccggggaagc
cttaaggccctggagaaggacctcgcccgctggcttgccgaggggaagcgggtccacctc
ttcgtgggccacgcccgcaccctggagtacctcaaaaggcgcctccaggccttctcgccc
ctcatcctggaccgcttccccggccccaaggggcggcttgccctcctctttggggacttt
gagggcggggcggagtggggggagtgggtcctcctcaccgaggccttggtcttcgccacc
gggggggtgcgggccagggtccgggtaggggaggggcttagcgaccccggggccctttcc
ccaggggactacctcatccacccggagcacggtgtcgggcagtacctgggcctggagacc
cgggaggtcctgggggtcaagcgggactacctggtcttgcgctacaagggggaagggaag
ctctacctccccgtggagcagcttcccctcctcaagcgccaccccgggaccaccgacgac
cccccggagctttcctccctgggcaaaaacgagtggcagcgggccaaggagcgggcgcgg
aaggacgtggaggagctcgccgggcgcctcctcgtcctccaggccaagcgcaaggccacc
ccgggccgggcctttccccccttgcccgagtgggaccctctggtggagaaggggttcccc
tacgagctcacccccgaccagaagcgggccctggaggaggtcctccgcgaccttgaaagc
ccccaccccatggaccgcctggtctcgggggacgtgggcttcggcaagacggaggtggcc
ctgagggccgcccaccgggtggtggggcacggggcccaggtggccttcctcgtgcccacc
accctcctcgctgagcagcacgggaagacctttagggagcgcttccaggggcttcccgtg
agggtggcggtcctctcccgcttcaccccgcccaaggaggaggaggccatcctaaaaggc
cttgccgaaggcacggtggacatcgtcatcggcacccaccgcctcctccaggaggacgtg
cgcttcagggacctcggcctcctcatcgtggacgaggagcaccgcttcggcgtggcccag
aaggagaggatccgggagctcaaggcggaggtggacaccctctacctctccgccaccccc
atcccccgaaccctctactccgccctggtgggcctcaaagacctttccagcatccagacc
ccacccccggggcgcaagcccatcaagaccttcctcgctccctttgatcccctcttggtg
cgggaagccatcctctttgagctggagcgtgggggcaaggtcttctacgtccacgaccgg
gtggcctccatagaggccaggcggcgctttctggaaagcctcgtccccgaggcccgcatc
ggggtggtccacggtcagatgcccgaaagcctcattgaggagaccatgctcctcttcgcc
gaaggggcgtacgacgtcctcctcgccaccaccatcattgaggcgggcctggacgtgccc
gaggcgaacaccatcctcattgagcgggcggaccgcctgggcctcgccaccttgtaccag
ctccggggccgggtggggcggagggaggaggaggcctacgcctacctcttccacccgcct
cgcctcaccgaggccgcagagaagcgcctcgccgccatcgccgacctctccgacctgggc
tcgggccacctcctggccgaaagggacatggagatccggggcgtggggaaccttctgggc
ccggagcagcacgggcacatccgggcgctttccctcgaggtctacaccgagcttctggaa
gaggccatccgcaagctcaagggggaggtcaaggaggagcggaggcacgtgaccctggac
ctcgccctctccgcccgcctgcccgcggagtacgtggggagcctcgaggccaggagccgc
tactacagccgcttcgccgaggcgaaaagcctcgccgagctttcccgcctggtgcgggag
ctcaaggagcgctacgggccccttcctgaggaggcggagaacttcgtcaacctcacccgg
ctccgcctggtggcggagaggaagggggtggtgtccatcacggagggcctcacccacctg
gaggtggtcttcccccgctaccccttggactacgacgcccgcggcctcaaagggcttccc
taccgggtagaacttacgcagtacccgcccgggttccgcctggagaagaagggcctgagg
ccccgggactaccccgaggccctgatggaggtgctctacctcttcgccgacctctaa
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