Thermoproteus tenax: TTX_0820
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Entry
TTX_0820 CDS
T01641
Symbol
rph
Name
(GenBank) exosome complex exonuclease 1 (RNase PH)
KO
K11600
exosome complex component RRP41
Organism
ttn
Thermoproteus tenax
Pathway
ttn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TTX_0820 (rph)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttn03019
]
TTX_0820 (rph)
Messenger RNA biogenesis [BR:
ttn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TTX_0820 (rph)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
TTX_0820 (rph)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
CCC81473
UniProt:
G4RPH8
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All DBs
Position
707996..708733
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AA seq
245 aa
AA seq
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MKQSPVPLLVEGKRADGRAPDQMREVNIAVGVISNADGSAMVSYGNTVAVAAVYGPREMH
PRHLSLPDKAVMRVRYHMAPFSTKDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSR
IDVFIEILQADGSTRVASLTAASLALADAGIPMRDLVIGVSVGLVNGVVVLDLNGLEDNY
GEGDMPVGYMPNLRRISLLQLDGAWTRERFTEALRLAIKGAEYVYSKAREALKSKYFEIA
EEVAK
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaatcccccgtgcctttacttgtggagggcaagagggccgacggcagagcccct
gatcagatgcgagaggtaaatatagctgtcggcgtaatctcgaacgccgacggatcagcc
atggtctcatacggcaacactgtggctgtagcggccgtgtacggcccaagggagatgcat
ccgcgccatctaagcctacccgataaggccgtgatgcgcgtaaggtaccacatggcgccg
ttcagcacaaaggatgagagaaagaacccagcgccatcccgccgcgagatagagatatct
aaggtgctcagagaagcgctcgagcccgctatatttcttgagcagtttccgcgctcccgc
atagacgtattcattgagattctgcaggccgacggctcaacaagggtggcgtcgctgacg
gcagcctctctagctttggccgacgcagggatccccatgagggacttggtcataggcgtt
tcagtgggtctcgtcaacggcgttgttgtgttggacttaaacggcctagaggacaactac
ggcgagggagacatgcctgtcggatatatgcccaacttgaggaggatatcccttttacag
ctcgacggagcgtggactagggagaggttcacagaggcattgcggctagccataaaaggc
gccgagtatgtgtacagcaaggcgcgcgaggcgcttaaatcgaaatacttcgaaatagct
gaggaagttgccaaataa
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