KEGG   Thermoproteus tenax: TTX_1041
Entry
TTX_1041          CDS       T01641                                 
Symbol
cdc48
Name
(GenBank) cell division cycle protein, AAA family
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
ttn  Thermoproteus tenax
Pathway
ttn04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ttn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    TTX_1041 (cdc48)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ttn03019]
    TTX_1041 (cdc48)
   03009 Ribosome biogenesis [BR:ttn03009]
    TTX_1041 (cdc48)
   04131 Membrane trafficking [BR:ttn04131]
    TTX_1041 (cdc48)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ttn04147]
    TTX_1041 (cdc48)
Messenger RNA biogenesis [BR:ttn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     TTX_1041 (cdc48)
Ribosome biogenesis [BR:ttn03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    TTX_1041 (cdc48)
Membrane trafficking [BR:ttn04131]
 SNARE
  SNARE associated proteins
   Others
    TTX_1041 (cdc48)
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    TTX_1041 (cdc48)
Exosome [BR:ttn04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   TTX_1041 (cdc48)
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_2 AAA_14 AAA_5 AAA_22 AAA_33 TIP49 Vps4_C AAA_24 nSTAND3 IstB_IS21 RNA_helicase AAA_28 AAA_18 Mg_chelatase ATPase_2 AAA_25 TsaE NACHT AAA_17 NPHP3_N MazE_antitoxin DUF815 Sigma54_activat NB-ARC AAA_7 ABC_tran ATPase AAA_3 Bac_DnaA Parvo_NS1 HEPN_SAV_6107
Other DBs
NCBI-ProteinID: CCC81686
UniProt: G4RQ40
LinkDB
Position
complement(898544..900892)
AA seq 782 aa
MRLPLKNSSPPLAQSRRRDEESFYRQGRAMSMADEVILRIYEAKSRDVGRSIVRIPIRVM
KKLGVEPGDYVEIVGRKTAYAQVWPAYPEDEDKDIIRMDGMIRQNAGVGIGDTVKVRRVS
LKPAQRVVLAPTEPVRVDPEYLKKQILLGKPVTRGQAIDVPFYGGSIRFVVVQVQPGPAA
YVSVDTDVAVREEPVKETELAIPRVTWEDIGDLEEAKQKIRELVELPLRHPELFKHLGIE
PPKGILLYGPPGVGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEAKLREIFEEAKKN
APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQIVVIGATNRPDAVDPA
LRRPGRFDREIQIPMPDKRARREILQVHTRNMPLCTSDDVKLGLCAKGDEVDLDRIAEMT
HGYTGADIAALAKEAAMSALRKAVAKGLVDLDQETIPPEVLNKLKVGMSDFMEAMKFVQP
TVLREVIIEVPEVRWDDIGGYDNIKQELREIVEWPMKYRPYFDELGIEPPKGILLYGPPG
VGKTMFAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFKRARMAAPCVVFFDEIDS
IAPARGSRLGDSGVTDRIVNQMLAEMDGIGALKNVVVMAATNRPDILDPALLRPGRFDRI
IYVPPPDEKARLEIFKVHTKRVKLCDTSAVKEGRCKKEEVVDLEELAKRTEGYTGADIAA
LVREAAMLALRETIRERASGARPVSRQHFEEALKRIPPSLTKEDIKMYEEVSKRMRRAIV
GL
NT seq 2349 nt   +upstreamnt  +downstreamnt
atgagacttcctcttaaaaactcatctccgccattggcgcagagtcgccggcgcgatgaa
gaaagcttttatagacaggggagggccatgagcatggccgatgaggtcattctgcgcata
tacgaagcgaagtcccgcgacgttgggcgctcgatagttaggataccgataagagtcatg
aagaagctcggcgtagagccgggcgactacgttgagatcgtggggcgcaagacggcctat
gcgcaagtgtggccggcctatcctgaggacgaggacaaagacataatacgcatggacggc
atgataaggcagaacgctggcgtgggcataggggatacggtcaaagtgaggagggtctcg
ctgaagccagcccaaagggtagtcttggcccctacggagcccgtcagagtagacccggag
tacctcaagaagcagatccttctgggcaagcctgtgacgcgcggacaggccatagacgtg
cccttctatggcggctccataaggtttgtagtagttcaagtgcaaccaggcccggcggcc
tacgtgtcggttgacaccgacgtggctgtaagggaggagcccgtcaaggagaccgagctg
gccatccctcgcgtcacttgggaggacatcggcgatctggaggaggcgaaacagaagata
agggagctagtggagctcccgctgaggcaccccgagctgttcaaacatctgggcatagag
ccgcccaaggggatactcttgtacgggcctccgggcgtgggcaagaccctcctcgccaag
gcggtggccaacgaggccaacgcgtacttcatagccataaacggccccgagataatgtcc
aaatactacggcgagtccgaggccaagctgagggagatattcgaggaggccaagaagaac
gccccggccataatcttcatagacgagatagacgccatagccccaaagagggaggaggtg
acgggggaggtcgagaagagggtcgtggcccagctgttgactctgatggacggtctgcag
gagagggggcagatagtcgtaataggcgcgacgaataggcccgacgccgtggacccggcg
ttgaggaggcccgggaggttcgacagagagatccagataccgatgccggacaagagagct
aggcgcgagatactccaagtccacacgaggaacatgccgttgtgcacaagcgatgacgtc
aaattaggtctctgcgccaagggcgatgaggtagacctagatagaatcgccgagatgacc
cacggctacactggggccgacatagccgccttggccaaggaggcggccatgtctgcgttg
aggaaggctgtggctaagggattggtagacctagaccaagagacaataccgcccgaggtg
ctcaacaaactcaaggtgggtatgtcggacttcatggaggcgatgaagttcgtacaaccc
accgtcttaagggaagtgatcatagaggtgcccgaggttcgttgggacgacataggcggc
tacgacaacataaaacaggagctgagggagatcgttgagtggcccatgaagtatagaccc
tatttcgacgagctcggcatagagccgcccaaggggatactcttgtacgggcctccgggc
gtgggcaagaccatgttcgccaaggcggtggcaacagagtcgggcgccaacttcatcgcc
gtgagggggcccgagatcctctccaagtgggtcggcgaatcggagaaggcggttagggag
atcttcaagagggccaggatggctgctccatgcgtagtcttcttcgacgagatagactct
attgctccagcccgcggctcccgcctaggcgactctggcgtaactgacagaatcgtgaac
cagatgctggcggagatggacggaataggcgctctgaagaacgtagtagtcatggcggcc
acaaaccggcccgacatcttggatccagccctgttgaggccaggccgcttcgaccgtata
atctacgtcccgccgcccgacgaaaaggcgaggttggagatcttcaaagtgcacaccaag
agagttaaattatgcgatacatcggccgtgaaggagggcagatgtaagaaggaggaggta
gtcgatctggaggagctggccaagaggaccgagggctacactggcgccgacatagcggcg
cttgtgcgcgaggccgccatgttggctctgagggagacaataagagagagggccagcggc
gccaggccggtgtcacgtcaacacttcgaggaggcgctcaagaggataccgccgtcgttg
actaaggaggatataaagatgtacgaggaggtgtcgaaaaggatgaggagggctatcgtt
gggctctag

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