Thermoproteus tenax: TTX_1739
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Entry
TTX_1739 CDS
T01641
Name
(GenBank) RNA-binding protein, S1 and Zn-ribbon domains
KO
K07573
exosome complex component CSL4
Organism
ttn
Thermoproteus tenax
Pathway
ttn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TTX_1739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttn03019
]
TTX_1739
Messenger RNA biogenesis [BR:
ttn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TTX_1739
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TTX_1739
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Prok-RING_1
Zn_ribbon_RRN7
Auto_anti-p27
DNA_ligase_ZBD
Zn_ribbon_RPB9
zf-Tbcl_FmdE
Zn_ribbon_8
Zn_Ribbon_TF
DUF7573
Cas12f1-like_TNB
Zn_ribbon_6
DZR
DUF7129
Motif
Other DBs
NCBI-ProteinID:
CCC82360
UniProt:
G4RLB5
LinkDB
All DBs
Position
complement(1514851..1515387)
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AA seq
178 aa
AA seq
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MSVKRKLVLPGEEVAMPEEFMVEGSSYLDSVFRSSALGYVVYDSLSHTAVVKPFKRDSYP
RQGDILYCVVTSKGVRALNVRCVAREMKEGFEELKYPVTGLIPPQLVDGKVGIGDYVRAR
VVSNYGPPFLLSIRGSTFGVVRAVCPKCGNVMRRRGGILVCPVCGATAVRKIAHGFYV
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgtcaagcggaaattggtcttgcccggagaggaggtagcgatgcccgaggagttt
atggtcgagggcagctcgtatcttgacagcgtgttcagatcctctgcgctaggatatgtc
gtgtacgactctctgagccatacagcagtggtaaagccgtttaagcgcgactcgtaccca
agacaaggcgatatactctactgcgtggtgacgtccaagggcgtaagagcgctcaacgtc
agatgtgttgcgagggagatgaaagagggatttgaggagttaaagtatccggtgaccggc
ttgataccgcctcaacttgtggacggcaaagtcggcataggcgactacgttagagccaga
gtggtgtcgaactacggccctccgtttctgctctctataaggggctccaccttcggcgtc
gtgagggctgtgtgccccaaatgcggcaatgtaatgaggaggcgcggaggcattctagtg
tgccctgtctgcggagccaccgccgttaggaagatagctcacggcttctatgtttaa
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