Thermochromatium tepidum: E6P07_00175
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Entry
E6P07_00175 CDS
T06573
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
ttp
Thermochromatium tepidum
Brite
KEGG Orthology (KO) [BR:
ttp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttp03021
]
E6P07_00175 (rapA)
Transcription machinery [BR:
ttp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
E6P07_00175 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
Tudor_RapA
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
QGU33912
UniProt:
A0A6I6E7Q6
LinkDB
All DBs
Position
37882..40671
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AA seq
929 aa
AA seq
DB search
MQNFVPGQRWLSETQSELGLGLVEAVEGRHVRILYPATGETRIYARDQAPLVRLVVRRGE
RIRDRAGRELRVLDACTEQGLITYRAEDSAGLIHALPESELDDRLSFNRPGQRLLAARFD
SDVWFRLRYRTWLQRMRAAGSPTLGLVGARVALIPHQLHIAAEVSRREAPRVLLADEVGL
GKTIEAGLILHRMRLTGGARRVLILTPEPLLHQWLVEMRRRFNLALALFDRERFESIRDD
NPFLSEQRVLCGLEWLVEAPAAGQAALDAPWDLLIVDEAHRLTWTETAPSPAYRLVEALA
SRIPSVLLLTATPEQLGRAGHFGRLRLLDPARFQDPIAFQEEEARYAPIAALAARLLDDE
PLAAADRERLASLLGNIEGLDRDTLIDRLIDRHGTGRVLFRNTRATIPGFPRRELIAYPL
PEPEAYRGLSEPLLRLTPEYAHGPGWETIDPRVDWLIATLRDLRPAKVLLICARARTVLE
LREVLRRRAGIQAAVFHEGQEIVDRDRAAAYFASVEDGAQILLCSEIGSEGRNFQFAHHL
ILFDLPLDPDLLEQRIGRLDRIGQTETIYLLLPYLSGGPMETLFRWYAEGLGAFEHPCLA
AAAVYERLGERLKEALTSPADSALTEALITETRGLAAQIKAELAAGRDLLLELHSHRLTR
DAALVESIAAIDAERTVADYLTDFWDAFGVEHEPGPAGSVVVRPGPQMLQETFPCLPEDG
LTVTFDRAQALAHEDYEFLTWEHPMTRAAMELLTTSDLGSAALVLIRGDARLPHTTLLLE
ILYVAECPAPPELQVEHFLPPTLVRLLLDAEGRDRAAEIEHESLRGDCLSHNTKLARALI
ASQASRLTEWLERGEALAHGALESLEQGARRRMHQVLGDELERLLALAKVNPRVRPDEIA
RLRHRRERLDALLGQIHLRLDALRLIVAH
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacttcgtgcccggtcaacgctggctgagcgagacccaatccgagctggggctc
ggactggtcgaggccgtcgaggggcgccatgtccgcatcctctatccggcaaccggcgag
acccggatctatgcgcgtgaccaagcccccttggtccgcctcgtggtccggcgcggcgaa
cgtatccgcgaccgcgccggacgcgaactgcgggtgctggatgcgtgtaccgagcaggga
ctcattacctatcgcgctgaggacagcgcaggtctgatccatgccttgcccgagtccgaa
ctcgacgatcgtctgagcttcaaccgtccgggtcagcgactgctggcggcgcggtttgac
agcgatgtctggtttagactgcgctaccgtacctggcttcagaggatgcgcgccgcaggc
tcgccgaccctaggtctggttggcgcacgcgtcgcgctcatcccgcatcagctgcatatc
gccgccgaggtctcgcggcgcgaggccccgcgtgtgctcctggccgacgaggtcggtttg
ggcaagaccatcgaggccgggctgatcctacaccggatgcgactcacaggcggtgcgcgc
cgggtgctgatcctcacccccgagccgttgctgcatcagtggctggtcgagatgcgccgg
cgtttcaatctggcactcgccctgttcgatcgggagcgcttcgagtcgatccgggacgac
aacccctttctgtctgaacagcgcgtgctctgcgggttggagtggctggttgaagcgcct
gccgccgggcaggccgcgctggacgccccctgggatctcttgatcgtcgacgaggcgcat
cgcctgacctggaccgagaccgcgcccagtccggcctatcggttggtcgaggcgttggcg
agccggatcccgtcggtgctgctgttgaccgctacccctgagcaactcgggcgtgccgga
cacttcgggcgtctgcgtctgctcgacccagcgcgtttccaggatcccatcgcgtttcag
gaggaggaagcacgctatgcgcccatcgcggcgctcgccgcgcggctgctcgacgacgaa
ccgctcgctgccgccgatcgggaacgcctcgcctcactgcttggcaacatcgagggactg
gatcgcgacacattgatcgatcgcttgatcgaccgtcacggtaccgggcgcgtgctcttt
cgcaacacccgcgcgaccatccctggctttccgcgtcgcgaactgatcgcctatccgctc
cccgaacccgaagcctatcgaggactttccgagccgctgctgcggctgacgcccgagtat
gcgcacggtcccggctgggagacgatcgacccgcgtgtcgactggctgattgcgaccctg
cgcgacctgcgcccggccaaggtgctgctgatctgcgcccgggcgcgcaccgtgctcgag
ctgcgcgaggtgttgcgtcggcgcgccggcatccaggccgccgtcttccacgaaggtcag
gagatcgtcgatcgcgaccgggcggcggcctatttcgcgtccgtcgaggatggcgcccag
atcctgctgtgctcggagatcggcagcgagggacgcaatttccagttcgcccatcacctg
atcctgttcgacctgccgctggacccggatttgctcgaacagcgcatcggtcggctcgac
cgcatcggccagactgagacgatctacctgctcctgccttatctgagcggcggacccatg
gagacgctgtttcgctggtatgccgaggggttgggcgcgttcgagcatccgtgtctggcg
gcagcggccgtgtatgaacgtctaggcgagcgcctgaaagaggccctgaccagtccagcc
gattccgcgctgaccgaggcgttgatcaccgagacccgcgggctcgccgcccaaatcaag
gccgaactggccgccggtcgcgatctgttactcgagctgcactcacaccggctgacgcgc
gatgccgccctggtcgagtcgattgccgcgatcgatgccgagcgcacggttgccgattat
ctgaccgacttttgggacgccttcggcgtcgagcacgagcctggtccggctggatccgtg
gtggtacgacccggtccgcagatgctccaggagaccttcccgtgcctgccagaggatggg
ctgactgtgaccttcgaccgtgcccaggcgctcgcgcatgaggattacgaattcctgacc
tgggagcatcccatgacgcgcgcggcgatggaactgttgacgacctccgatctgggcagc
gcggcgctggtcctgatccggggcgacgcacgccttccgcacacgaccctgttgctggag
atcctctatgtcgccgagtgtccggccccgcccgaactccaggtcgagcacttcctaccg
ccgaccctggtgcggttgctgctcgacgccgaggggcgggatcgtgccgcagagattgag
cacgaaagcctcaggggcgactgtctgagtcacaacaccaaactggcccgcgccctgatc
gcctcacaggcgtcgcgtctgaccgaatggctggagcggggcgaggcactggcgcacggc
gcgctggagtccttggagcaaggggcgcgcaggcgcatgcatcaggtacttggcgatgag
ctggaacgcctactggccctggcgaaggtcaatcccagggtacgccccgacgaaatcgca
cggctacggcacaggcgcgagcggctcgatgcgctgctcggccagatccatctacggctt
gacgcgctgcggttgattgtcgcccattga
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