Thermochromatium tepidum: E6P07_00435
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Entry
E6P07_00435 CDS
T06573
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ttp
Thermochromatium tepidum
Brite
KEGG Orthology (KO) [BR:
ttp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ttp03009
]
E6P07_00435 (rlmD)
Enzymes [BR:
ttp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
E6P07_00435 (rlmD)
Ribosome biogenesis [BR:
ttp03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
E6P07_00435 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
RrnaAD
TRAM
PCMT
MTS
Methyltransf_11
TRM5-TYW2_MTfase
Methyltransf_23
Cons_hypoth95
Methyltr_RsmB-F
Methyltransf_12
Methyltransf_15
Methyltransf_32
Ubie_methyltran
Yop-YscD_ppl_3rd
PrmA
Motif
Other DBs
NCBI-ProteinID:
QGU31591
UniProt:
A0A6I6DVS3
LinkDB
All DBs
Position
100271..101593
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AA seq
440 aa
AA seq
DB search
MSRTPKTLPPPIEVEIQALTHEGRGLTRIQGKTVFVDGALPGERVRLRYTRIQRRFDEAE
VEEVLRAAPDRVAPRCIHFGVCGGCALQHVHPEAQIRLKQEGLKDVLERIGQVTPERWLE
PLTAEPWGYRRKARLGVRHVVKKGRTLVGFRERRNRFLADLRRCEVLHPQVGTRLEALAA
TIETLSIRDQVPQIEMAMGDGPCVLVFRVMQTPKPEDEVRLLELGRREGFHLYLQDGGVD
SIRPLPGQEVRLSYSLPNHGVEIGFLPSDFTQVNLELNRRLVDQALDLLDPGPRDRVLDL
FCGLGNFTLPLARRSAEVVGVEGDAGLVERARANAERNGLSKVRFYVADLQSELSAEAPW
TRQRFTKALIDPPRSGAWEVLDWLPRLGVERLVYVSCYPATLARDADRLVNTLGYRLRAA
GAMDMFPHTSHVESMALFER
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgagaacacccaaaacgcttcccccgcccatcgaggtcgagatccaagccctaacc
catgaaggccgcggcctgacccgcatccagggcaagaccgtgttcgtcgatggcgccctg
cccggcgagcgcgtgcgtctgcgctatacccggatccagcgccgcttcgacgaggccgag
gtcgaggaggtcttgagggccgcgcccgatcgcgtcgcgcctcgctgcatccactttggc
gtctgcggcggctgtgcgcttcagcatgtgcatcccgaggcccagatccgcctcaagcag
gagggactcaaggatgtcctcgaacgcatcggtcaggtgacgcccgaacgctggctcgag
ccgctcaccgctgaaccctggggctatcgccgcaaggcacggctcggggtacgtcatgtc
gtcaagaaggggcgcaccctggtcggctttcgcgagcgccgcaatcgcttcctggccgat
ctgcgccgctgcgaggtgctgcacccgcaggtcggcacgcgcctggaggccctggcggcg
accatcgagaccctgagcatccgcgaccaggtcccccagatcgagatggcgatgggcgat
ggaccctgtgtgctggtgttccgcgtcatgcagacgccgaagcccgaggacgaggtgcgc
ctgctcgaactcggacgacgcgagggcttccatctctatctccaggatggcggcgtcgac
agcatccggccgcttccagggcaggaggtcaggctgagttatagcctgcccaaccacggc
gtcgagatcggttttctgccgagcgatttcacccaggtcaatctggagctcaaccgacgc
ctggtcgatcaggcgctcgatctgctcgaccccgggccgagggatagggtgctggatctg
ttctgcggactgggcaatttcaccctgccgctggcgcgccgttcggctgaggttgtcggc
gtcgagggcgatgccggactggtcgaacgcgcgcgggccaacgccgagcgcaatgggctg
tccaaggtgcggttctatgtcgccgatctccagtctgagctcagtgccgaggccccctgg
acccgacagcgtttcaccaaggccctgatcgatccgccgcgcagcggtgcctgggaggta
ctcgactggctaccgcgtctgggcgtcgaacgcctggtctatgtctcctgctatccggcc
acactggcgcgcgacgccgaccggctggtcaacacccttggttatcgactgcgcgcagca
ggtgcgatggacatgttcccacacaccagtcatgtcgagtcgatggcgctcttcgagcgc
tag
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