Thermochromatium tepidum: E6P07_00590
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Entry
E6P07_00590 CDS
T06573
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ttp
Thermochromatium tepidum
Pathway
ttp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ttp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E6P07_00590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ttp03400
]
E6P07_00590
Enzymes [BR:
ttp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E6P07_00590
DNA repair and recombination proteins [BR:
ttp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E6P07_00590
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
MFD_D3
Helicase_C
ResIII
UB2H
Cas3-like_C_2
AAA_30
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QGU31621
UniProt:
A0A6I6DVV1
LinkDB
All DBs
Position
complement(126767..130249)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSSSSTRPLHSPLDPPLPRRPGERQLWGRLYGAGTSLAIARVAARHSGLVLVVVDSIQAA
ATRRAELGFFLDGGEPPLLDFPDWETLAYDIFSPLPELVSERLLTLYRLPTLESGLLIVP
VATLMQRLPPRDYVDGHSLVLAVGQRFDRDTMRRRLEQAGYTCVSQVLGHGEYAVRGSLL
DVFPMGSRVPLRIDLFDDEIEGIRVFDPETQRSKDTLDQIRLLPAREFPFDEDAISGFRR
RYRAAIAGDPQRSLIYREVSRGQAPGGLEYYLPLFFEQTATLFDYLPADTLVIEAVECRD
TARAFFAEIEQRYAQRRHDSERPPLPPAQLYLTPEELAGRLNRLSGVIHQSDPIDQRRKG
YAEVYHFSTQPLPPLTIQARSAHPDQALRAFLASAQRRLLFVAESNGRRELLAEQLKGFG
IQTRPVAGWHKFLAGEADLALTVAPIEQGLLLEDAGLAVITESQLYGERVRQERRRRARE
RDSDAIIRNLTELSEGAPVVHEEHGVGRYLGLQTLTVGGVTTEFLMLEYANGDRLYVPVS
SLHLISRYTGASPENAPLHKLGGDQWQRIKRRAAQEAHDVAAELLDIQARRAARQGIAFP
TGGEDYAAFAAAFPFEETPDQQRAIESVLADMASPRPMDRVVCGDVGFGKTEVAMRAAFI
AVQGGRQVVVLVPTTLLAHQHFENFSDRFADWAVRIESLSRFRTAREQKAVLNGLADGSI
DIVIGTHKLLQPQIRFKRLGLVIIDEEHRFGVRHKERLKALRTEVDVLTLTATPIPRTLN
LALSGLRDLSIIATPPVERHPIKTCVTPWDDALIREAVLRELKRGGQVYFLHNEVETIEN
LAQRLATLIPEARLAVAHGQLPERALERIMRDFYHQRFNLLVCTTIIESGIDIPSANTIL
INRADKLGLAQLHQLRGRVGRSHHRAYAYLLTPPTQAMTADAKKRLEAIEAMEDLGAGFT
LATHDLEIRGAGELLGEEQSGQITEVGFTLYMEFLERAVAALKSGRVPELDRPLDHGPEI
DLGIPALLPSDYLPDVQARLVFYKRIASARDREELHELQVEMIDRFGDLPEPARNLLEIT
ALKLLIQPWGIRKIEAGPAGGRLLFTESPKIDPARLIALIQSRPKEYKLEGGNKLKFFCD
MAEPGVRIHEVRRILKPLLD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtcctcaacccgccccttgcactctccgctcgacccaccgctgccgcgtcgc
ccgggtgaacgtcagctctggggccggctctatggtgccggcacctcgctggcgatcgcc
agggtcgccgcacgccactccggattggtcctggtggtggtcgatagcatccaggccgct
gcgacccgacgcgctgaactgggcttcttcctggacggaggcgagcctccgctcctcgac
tttcccgattgggagaccctcgcctacgacatcttctcgcccttgcccgagctggtctcg
gagcgactgcttaccctgtatcgtctgccgaccctggagtcgggtctgttgatcgtcccg
gtcgccaccctgatgcagcgtctgccgccgcgtgactatgtcgatggccattcgctggta
ctggccgtcggccagcggtttgatcgcgacaccatgcgccgccgcctggagcaggcaggc
tatacctgtgtctcgcaggttctcggacacggcgaatatgcggtgcggggctcgctcttg
gatgtcttccccatggggagtcgggtgccgttgcggatcgatctgttcgacgacgagatc
gaggggatccgggtgttcgatcccgagacccagcgctccaaggatacactcgaccagatc
cggctgctgccggcgcgcgagtttccgttcgacgaggacgccatctcgggtttccgccgc
cgctatcgcgccgccatcgccggcgatccgcaacgcagcctcatctatcgcgaggtctcc
cgaggtcaggcgccaggcgggctcgaatactatctgccgctcttcttcgagcagacggcc
acgctcttcgactatctgcccgcagacaccctggtcatcgaggcggtcgagtgtcgtgat
acggcgcgtgcctttttcgcggagatcgagcagcgttatgcgcagcgtcgccatgacagc
gaacgcccacccttgccacccgcccagctctatctgactcccgaggaactggccgggcgg
ctcaatcggctctcgggcgtcatccatcagtcagaccccatcgaccagaggcgcaagggc
tatgccgaggtctatcacttctcgacccagcccctgccgccactgaccatccaggcgcgc
agcgcgcacccagaccaggccctgcgcgcctttctcgccagcgcgcagcggcgcctgctc
ttcgtcgccgaaagcaacggacggcgcgaactgctggccgagcagctcaagggcttcggc
atccagacccgtccggtcgcgggttggcacaaattccttgccggcgaggctgatctcgcc
ctgacggtcgcccccatcgagcagggtctgctgctcgaagacgccgggctcgccgtcatc
accgaaagccagctctatggcgagcgggtgcgtcaagaacggcgccgacgtgcccgcgag
cgcgacagcgacgccatcatccgcaacctcaccgagctgagcgagggtgcacccgtggtc
catgaggagcacggcgtcggacgctatctaggtctccagacgctcacagtcggtggagtg
accaccgagttcctgatgctcgaatatgccaatggcgaccggctctatgtgccggtcagc
tcactgcacctgatctcgcgctacaccggggcctcgccagaaaacgcccccttgcacaaa
ctcgggggtgatcagtggcagcggatcaagcggcgtgccgcgcaggaggcgcacgacgtg
gccgccgagctgctcgatatccaggcgcggcgtgccgcacgtcagggtatcgccttcccg
acgggcggtgaggactatgccgccttcgccgccgcctttccgttcgaggagacaccggat
cagcaacgcgccatcgagtcggtgctggccgacatggccagtcccaggccgatggatcgc
gtggtctgcggtgacgtggggtttggcaagaccgaggtcgccatgcgcgccgccttcatc
gcggtccagggcgggcggcaggtcgtggtcctggtgccgaccaccctgcttgcgcaccag
catttcgagaacttctccgaccgtttcgccgattgggcggtacgtatcgagagtctgtcg
cgcttccgcaccgccagggaacagaaggcggtgctcaatgggctcgccgatggcagcatc
gacatcgtgatcgggacccacaagctgcttcagccacagatccgattcaagcgactcggt
ctggtcatcatcgacgaggaacatcgcttcggggtgcgtcacaaagaacggctgaaggcg
ctgcgcactgaggtcgatgtcttgacgttgactgccacccccatcccgcgcaccctcaac
ctggccctgtccggtctgcgcgatctttcgatcatcgccaccccaccagtggagcgccat
ccgatcaagacctgcgttaccccctgggacgacgcactgatccgagaggcggtgttgcgc
gagctcaagcgcggcggccaggtctatttcctgcacaacgaagtcgagaccatcgagaac
ctggcccagaggctcgccaccctgatcccggaggcacggctagcggtcgcccatggtcag
ctgcccgagcgcgcgctcgaacgcatcatgcgcgacttctaccaccaacgtttcaacctg
ctggtctgtaccaccatcatcgagagcgggatcgacatcccctcggccaacaccatcctc
atcaaccgcgccgacaaactgggtctggcccagctccatcaattgcgcggtcgggtcggg
cgctcacaccatcgcgcctatgcctatctcctcacccccccgacccaggccatgacggcg
gatgccaagaaacggctggaggcgatcgaagcgatggaggatctgggtgccggattcacg
ctcgccacccatgacctggagatccgcggtgcgggcgagttgctgggcgaggaacaatca
ggccagattaccgaggtcggtttcacgctctatatggagtttttagagcgcgcggtcgcg
gcgctgaagtcagggcgcgtccctgagctcgatcgaccgctcgatcacggtcccgagatc
gatctcggaatcccggcgctcctgccgagtgactatctacccgatgtccaggcacggttg
gtgttttacaaacgcatcgccagcgcacgcgatcgcgaggaattgcacgaattgcaggtc
gagatgatcgaccgcttcggagacctgcccgagccggcgaggaatctgctcgagatcacc
gcactcaagctcctgatccaaccctggggcatccgcaagatcgaggccggcccggcaggc
gggcgcctactcttcaccgaatcgcccaagatcgacccggcccgactcatcgccctgatc
caaagccggcccaaagaatacaagctggaaggcggcaacaagctgaaattcttttgcgac
atggccgaacccggagtccggatccacgaggttcggcgcatcctaaaacctctgctggac
tga
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