Tolypothrix tenuis: NIES37_63150
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Entry
NIES37_63150 CDS
T10359
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ttq Tolypothrix tenuis
Pathway
ttq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES37_63150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttq03019
]
NIES37_63150
03009 Ribosome biogenesis [BR:
ttq03009
]
NIES37_63150
Enzymes [BR:
ttq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NIES37_63150
Messenger RNA biogenesis [BR:
ttq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES37_63150
Ribosome biogenesis [BR:
ttq03009
]
Prokaryotic type
rRNA helicases
NIES37_63150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
HEM4
Cas3-like_C_2
ADAMTSL1
Sigma70_r4
VpsR
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAZ02303
UniProt:
A0A1Z4N991
LinkDB
All DBs
Position
complement(7989084..7990619)
Genome browser
AA seq
511 aa
AA seq
DB search
MNLSFQELGISQERVEQLEKIGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLP
ILERLDVTQRAVQALVLTPTRELAMQVHDAITQFIGDEGLRVLAIYGGQSIDRQILQLRR
GVHMVVGTPGRVIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPEERQTA
LFSATMPPSIRQLVNKFLRSPATVTVEQPKAAPTKINQVAYLIPRHWTKAKALQPILEME
DPESALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLSRFRNRQVRWVVATD
IAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQVFERH
NRQSWQLLSIPTRAQIEARHINKLQEQVREALAGERLASFLPIVSELIEKYDAQAIAAAA
LQIAYDQTRPAWLSSDIEIPQEDNLPTPKPKLVKQRRDGSGDRSRSNWSKSDNIGEDERR
STPKPKLRAGRRDASPVNHKLGSSSARESAS
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttcgtttcaagaactaggcatttcacaagaacgtgttgaacaactagaaaaa
attggtttcaccacaccaaccaatattcaaactcaagcaattccccaactgctagctgga
cgcgatgtggttggacaatctcaaaccggaactggtaaaaccgcagctttttcattgcca
atactagaacggctagatgtgactcaaagagccgtgcaagcgctggtattaacaccaact
cgtgaattagccatgcaagttcacgatgcgattacccaatttattggtgatgaaggattg
cgggtattagcaatctacggtggtcaatcaattgatcgccaaattctacaactgcgacgt
ggtgtccacatggttgtgggtactcccggacgggtaattgatttgctagatcgcggttgt
ttgaagctcgatcaagtgaagtggtttgtgttggatgaagccgatgaaatgttgagcatg
ggctttatcgatgatgtaattaaaatcttgtcccaagcgccagaagaacggcaaacagcg
ctattctcagctaccatgccaccatcaattcggcaattggtcaacaaatttttgcgatcg
cctgcgacagttaccgttgaacagccaaaagctgctcccaccaaaattaatcaagtagct
tacctgattcctcgccactggacaaaagccaaagctttacagccaattctggaaatggaa
gatccagaatcagcattgatatttgtccgtaccagacgcaccgcagccgaactcaccagt
cagctgcaagcagccggtcatagtgttgatgaataccacggtgatttatctcaacaagcc
agagaacgcttactcagccgcttccgcaatcgccaagtccgctgggtagtagcaaccgat
attgcggctcgggggttagatgtagatcaactgtctcatgtgatcaactacgacttaccc
gatagcgtagaaacctacgtccaccgtattggtcgtactggtcgtgctggtaaagaagga
acagccatttcactagtacaaccatttgagcgccgcaagcagcaagtctttgaacgccat
aaccgtcaaagttggcaattgctttcaatccccaccagggcccaaattgaagcgcggcac
atcaataaattacaagagcaagttagagaagcattagctggcgaacgtttagcttcattc
ttgcccatagtcagcgaactgatcgaaaaatacgatgctcaagcgatcgcagctgcagca
ttgcaaattgcttacgatcaaactcgtccagcttggttaagttcagacattgaaattccc
caagaagacaatctcccgactcctaaacccaagttggtaaaacagcgtcgtgatggttca
ggcgatcgttcccgttccaattggagcaaatcagataacattggcgaagacgaaagacgt
tctactcccaagccaaaattgcgcgcaggccgtcgtgatgcttccccagttaatcacaag
ctaggttcatcttcagctagagagtctgcttcataa
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